FFCP PHASE1:Mm9::chr4:137237504..137237533,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=110351|HGNC=|MCL_coexpression_id=11|UniProt=E9PZZ8,Q6A063,A2ALS4|association_with_transcript=-84bp_to_ENSMUST00000047243,NM_001081155,uc008vjn.1,uc008vjo.1_5end|description=CAGE_peak_5_at_Rap1gap_5end|id=chr4:137237504..137237533,+|ontology_enrichment_celltype=CL:0000540!3.45e-08!33;CL:0000047!3.45e-08!33;CL:0000031!3.45e-08!33;CL:0000404!3.45e-08!33;CL:0000221!4.88e-08!44;CL:0000133!4.88e-08!44;CL:0002319!1.81e-07!43|ontology_enrichment_celltype_v019_2=CL:0000221,2.98e-08,44;CL:0000133,2.98e-08,44;CL:0002319,3.34e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.16e-13!75;UBERON:0001016!5.16e-13!75;UBERON:0001017!7.19e-13!73;UBERON:0005743!7.19e-13!73;UBERON:0004121!1.37e-11!102;UBERON:0000924!1.37e-11!102;UBERON:0006601!1.37e-11!102;UBERON:0002346!7.75e-10!71;UBERON:0003075!7.75e-10!71;UBERON:0007284!7.75e-10!71;UBERON:0001049!2.54e-09!52;UBERON:0005068!2.54e-09!52;UBERON:0006241!2.54e-09!52;UBERON:0007135!2.54e-09!52;UBERON:0000955!2.58e-07!50;UBERON:0006238!2.58e-07!50;UBERON:0002616!4.33e-07!49;UBERON:0000033!5.25e-07!63;UBERON:0003076!7.57e-07!12;UBERON:0003057!7.57e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.04e-10,73;UBERON:0001016,2.80e-10,75;UBERON:0001264,2.72e-08,12;UBERON:0003076,3.29e-08,12;UBERON:0003057,3.29e-08,12;UBERON:0004121,5.93e-08,95;UBERON:0000924,5.93e-08,95;UBERON:0006601,5.93e-08,95;UBERON:0000073,6.26e-08,54;UBERON:0001948,7.28e-08,5;UBERON:0002315,7.28e-08,5|phase1_expression=0,0,0,0,0,0.503637815735669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63634199468316,0,0,0.159992422793407,0,0,0,0.430942465371778,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,1.09012578190223,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0.633831403506179,0,0,0,0,0,1.79760066311043,2.68952813725088,0.311068836925433,0,0,4.57041575046086,4.63823935998388,0.489963196859816,0.862609239164127,0.919218786610021,0,2.29837208553338,1.38245879930619,0.263772575460388,0.365950574409639,0,0.558365998002762,1.68828783009504,0.763991238884051,1.47314292736834,1.56608848879013,0.559198337475902,0.227178579999552,0.0755715601067855,3.76823835312181,0,0,0,0,0,0.421333260395256,0,0,0,3.52108549441701,0,0,0,0,0,0,1.1418387971906,0,1.33597925158342,0.173485326766136,0,0,0.150722640552623,0,0.753999547978053,0,0.289198713839823,0,0.161766849947409,0,0,0,2.04946557908083,0.628340120440365,0,0,0,0,0.748953197024114,0,0.502617408451458,0.347648640384553,0.511430914660661,2.0778804455956,1.46017136760982,0.203678727700633,0.124406970610093,0,0.210441855886474,0,0,0.180062129805349,0.150704817835715,0.136072998302656,0.2562274405697,0.468508622798644,0.258703370739016,0,0,0.351902248327898,1.09597866213787,0.556094498451196,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.116765342367169,0,0,0,0,0,0.134206418760372,0.210289948564127,0.617427674275707,0,0,0,0,0.257734922644187,0.201683524623343,0,0.380451252225118,0.474529061544512,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,3.16182685621286,13.8753539100826,9.41992367048249,9.74837594982224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0.963303539926752,1.05490517932983,0,0,1.26203287766503,0,1.29254038639679,0.955875191810208,2.22798674082394,2.26461224631066,0.404810701674894,0.584511715822624,0,0.321321316421807,0.283880170416537,1.24645922567079,0.488660878060728,0.659880491890142,0,0.242780636154981,1.51161778482376,3.01768127609437,2.36241514304618,5.22639751504677,1.29214146584111,1.45413491791002,1.06949213515416,0.632073515871632,0,0,1.36175842301515,0,0,0,0,0.535106452806212,0.329098041204242,1.8267896946876,0.23467170806371,0,0,0,0,0.241251699712623,0.238744688006273,0.164140899745061,0.291480836629851,0.556275906031529,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0.813277868507395,0.216010681643603,0.418176592028937,0,0.269728692769641,0.578574190077352,0,0,0,0,0.149516546043979,0.165458490457098,0,0.258319646955462,0.168956125490778,0,0.13020438484395,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0,0,0.358053391334963,0,0.120195449519969,0.295379054349154,0.100966449948148,0,0.302478555410522,0,0,0.116876902181569,0,0,0,0,0.19318959403219,0,0.183151624267265,0.214368379079066,0,0,0.460325236507177,2.29158205375759,1.20297227640581,0,0.755393897389701,1.35004500046361,0,0,0.51776031175182,0,0,0.341467211508268,0.486213434136588,0.209613162627982,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0.25347929989024,0,0.280924522409647,0.256100609619477,0.229741875822453,0.952587382566147,0.115884325944855,0.38581844092741,0.412085900803307,0.735994600671987,0,0.177475806159338,0.238436189947321,0.290692833264657,0.282328141245992,0.507687647350059,0.365855945745545,0,0,0.561142271657738,0,0.394017929502254,0.409231043169689,0,0,0.749431733813838,0.701794825336225,0.429742108096597,0,0.882365676478062,0.231867835620421|short_description=p5@Rap1gap}} | ||
|EntrezGene=110351 | |||
|HGNC= | |||
|MCL_coexpression_id=11 | |||
|UniProt=E9PZZ8,Q6A063,A2ALS4 | |||
|association_with_transcript=-84bp_to_ENSMUST00000047243,NM_001081155,uc008vjn.1,uc008vjo.1_5end | |||
|description=CAGE_peak_5_at_Rap1gap_5end | |||
|id=chr4:137237504..137237533,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.45e-08!33;CL:0000047!3.45e-08!33;CL:0000031!3.45e-08!33;CL:0000404!3.45e-08!33;CL:0000221!4.88e-08!44;CL:0000133!4.88e-08!44;CL:0002319!1.81e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.98e-08,44;CL:0000133,2.98e-08,44;CL:0002319,3.34e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.16e-13!75;UBERON:0001016!5.16e-13!75;UBERON:0001017!7.19e-13!73;UBERON:0005743!7.19e-13!73;UBERON:0004121!1.37e-11!102;UBERON:0000924!1.37e-11!102;UBERON:0006601!1.37e-11!102;UBERON:0002346!7.75e-10!71;UBERON:0003075!7.75e-10!71;UBERON:0007284!7.75e-10!71;UBERON:0001049!2.54e-09!52;UBERON:0005068!2.54e-09!52;UBERON:0006241!2.54e-09!52;UBERON:0007135!2.54e-09!52;UBERON:0000955!2.58e-07!50;UBERON:0006238!2.58e-07!50;UBERON:0002616!4.33e-07!49;UBERON:0000033!5.25e-07!63;UBERON:0003076!7.57e-07!12;UBERON:0003057!7.57e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.04e-10,73;UBERON:0001016,2.80e-10,75;UBERON:0001264,2.72e-08,12;UBERON:0003076,3.29e-08,12;UBERON:0003057,3.29e-08,12;UBERON:0004121,5.93e-08,95;UBERON:0000924,5.93e-08,95;UBERON:0006601,5.93e-08,95;UBERON:0000073,6.26e-08,54;UBERON:0001948,7.28e-08,5;UBERON:0002315,7.28e-08,5 | |||
|phase1_expression=0,0,0,0,0,0.503637815735669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63634199468316,0,0,0.159992422793407,0,0,0,0.430942465371778,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,1.09012578190223,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0,0.633831403506179,0,0,0,0,0,1.79760066311043,2.68952813725088,0.311068836925433,0,0,4.57041575046086,4.63823935998388,0.489963196859816,0.862609239164127,0.919218786610021,0,2.29837208553338,1.38245879930619,0.263772575460388,0.365950574409639,0,0.558365998002762,1.68828783009504,0.763991238884051,1.47314292736834,1.56608848879013,0.559198337475902,0.227178579999552,0.0755715601067855,3.76823835312181,0,0,0,0,0,0.421333260395256,0,0,0,3.52108549441701,0,0,0,0,0,0,1.1418387971906,0,1.33597925158342,0.173485326766136,0,0,0.150722640552623,0,0.753999547978053,0,0.289198713839823,0,0.161766849947409,0,0,0,2.04946557908083,0.628340120440365,0,0,0,0,0.748953197024114,0,0.502617408451458,0.347648640384553,0.511430914660661,2.0778804455956,1.46017136760982,0.203678727700633,0.124406970610093,0,0.210441855886474,0,0,0.180062129805349,0.150704817835715,0.136072998302656,0.2562274405697,0.468508622798644,0.258703370739016,0,0,0.351902248327898,1.09597866213787,0.556094498451196,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.116765342367169,0,0,0,0,0,0.134206418760372,0.210289948564127,0.617427674275707,0,0,0,0,0.257734922644187,0.201683524623343,0,0.380451252225118,0.474529061544512,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,3.16182685621286,13.8753539100826,9.41992367048249,9.74837594982224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0.963303539926752,1.05490517932983,0,0,1.26203287766503,0,1.29254038639679,0.955875191810208,2.22798674082394,2.26461224631066,0.404810701674894,0.584511715822624,0,0.321321316421807,0.283880170416537,1.24645922567079,0.488660878060728,0.659880491890142,0,0.242780636154981,1.51161778482376,3.01768127609437,2.36241514304618,5.22639751504677,1.29214146584111,1.45413491791002,1.06949213515416,0.632073515871632,0,0,1.36175842301515,0,0,0,0,0.535106452806212,0.329098041204242,1.8267896946876,0.23467170806371,0,0,0,0,0.241251699712623,0.238744688006273,0.164140899745061,0.291480836629851,0.556275906031529,0,0,0,0,0.136694227721025,0,0,0,0,0,0,0.813277868507395,0.216010681643603,0.418176592028937,0,0.269728692769641,0.578574190077352,0,0,0,0,0.149516546043979,0.165458490457098,0,0.258319646955462,0.168956125490778,0,0.13020438484395,0.104859344425711,0.241584120826006,0,0,0.202725215290164,0,0,0.358053391334963,0,0.120195449519969,0.295379054349154,0.100966449948148,0,0.302478555410522,0,0,0.116876902181569,0,0,0,0,0.19318959403219,0,0.183151624267265,0.214368379079066,0,0,0.460325236507177,2.29158205375759,1.20297227640581,0,0.755393897389701,1.35004500046361,0,0,0.51776031175182,0,0,0.341467211508268,0.486213434136588,0.209613162627982,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0.25347929989024,0,0.280924522409647,0.256100609619477,0.229741875822453,0.952587382566147,0.115884325944855,0.38581844092741,0.412085900803307,0.735994600671987,0,0.177475806159338,0.238436189947321,0.290692833264657,0.282328141245992,0.507687647350059,0.365855945745545,0,0,0.561142271657738,0,0.394017929502254,0.409231043169689,0,0,0.749431733813838,0.701794825336225,0.429742108096597,0,0.882365676478062,0.231867835620421 | |||
|short_description=p5@Rap1gap | |||
}} |
Revision as of 04:11, 14 September 2013
Short description: | p5@Rap1gap |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rap1gap_5end |
Coexpression cluster: | MCL_coexpression_mm9:11 |
Association with transcript: | -84bp_to_ENSMUST00000047243, NM_001081155, uc008vjn.1, uc008vjo.1_5end |
EntrezGene: | Rap1gap |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.98e-08 | 44 |
neurectodermal cell | 2.98e-08 | 44 |
neural cell | 3.34e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.04e-10 | 73 |
nervous system | 2.80e-10 | 75 |
pancreas | 2.72e-08 | 12 |
posterior neural tube | 3.29e-08 | 12 |
chordal neural plate | 3.29e-08 | 12 |
ectoderm-derived structure | 5.93e-08 | 95 |
ectoderm | 5.93e-08 | 95 |
presumptive ectoderm | 5.93e-08 | 95 |
regional part of nervous system | 6.26e-08 | 54 |
regional part of spinal cord | 7.28e-08 | 5 |
gray matter of spinal cord | 7.28e-08 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.