FFCP PHASE1:Hg19::chr8:16612934..16612957,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr8:16612934..16612957,-|id=chr8:16612934..16612957,-|ontology_enrichment_celltype=CL:0000055!2.59e-11!180;CL:0000222!6.59e-07!119|ontology_enrichment_celltype_v019=CL:0002622;1.54e-10;3!CL:0002564;1.75e-10;3!CL:0002504;6.97e-10;3!CL:1000279;6.97e-10;3!CL:1000280;6.97e-10;3!CL:0000515;1.34e-09;3!CL:0002602;1.28e-07;2!CL:0002600;2.41e-07;2!CL:0000056;2.68e-07;4!CL:0002598;2.78e-07;2|ontology_enrichment_celltype_v019_2=CL:0002622,1.79e-10,3;CL:0002564,2.30e-10,3;CL:0002504,2.86e-10,3;CL:1000279,2.86e-10,3;CL:1000280,2.86e-10,3;CL:0002602,1.13e-07,2;CL:0002600,1.60e-07,2;CL:0000515,1.86e-07,4;CL:0000680,2.82e-07,58;CL:0000056,2.82e-07,58;CL:0000355,2.82e-07,58;CL:0002598,4.79e-07,2|ontology_enrichment_development_v019=CL:0000515;2.68e-07;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;1.51e-10;3!DOID:127;1.51e-10;3!DOID:0060072;5.37e-08;4|ontology_enrichment_disease_v019_2=DOID:0060084,2.03e-10,3;DOID:127,2.03e-10,3;DOID:0060072,6.65e-08,4|ontology_enrichment_uberon=UBERON:0000914!3.54e-08!83;UBERON:0002329!3.54e-08!83;UBERON:0003077!3.54e-08!83;UBERON:0003059!3.54e-08!83;UBERON:0007282!3.54e-08!83;UBERON:0009618!3.54e-08!83;UBERON:0007285!3.54e-08!83;UBERON:0002385!8.72e-08!63;UBERON:0001015!8.72e-08!63;UBERON:0000383!8.72e-08!63;UBERON:0005256!1.38e-07!143;UBERON:0002100!2.39e-07!216;UBERON:0001134!6.22e-07!61;UBERON:0002036!6.22e-07!61;UBERON:0003082!6.22e-07!61|ontology_enrichment_uberon_v019=UBERON:0011135;2.09e-16;5!UBERON:0002216;2.09e-16;5!UBERON:0011134;2.09e-16;5!UBERON:0002209;2.09e-16;5!UBERON:0002213;2.09e-16;5!UBERON:0007844;2.09e-16;5!UBERON:0011138;2.09e-16;5!UBERON:0001130;2.09e-16;5!UBERON:0001066;2.09e-16;5!UBERON:0001468;2.09e-16;5!UBERON:0002242;1.75e-10;3!UBERON:0004905;4.20e-10;8!UBERON:0000982;4.20e-10;8!UBERON:0004770;4.20e-10;8!UBERON:0000075;9.33e-09;16!UBERON:0006444;1.28e-07;2!UBERON:0001995;1.28e-07;2!UBERON:0004715;1.28e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0011135,2.43e-16,5;UBERON:0002216,2.43e-16,5;UBERON:0011134,2.43e-16,5;UBERON:0002209,2.43e-16,5;UBERON:0002213,2.43e-16,5;UBERON:0005856,2.43e-16,5;UBERON:0005866,2.43e-16,5;UBERON:0005863,2.43e-16,5;UBERON:0007844,2.43e-16,5;UBERON:0011138,2.43e-16,5;UBERON:0001130,2.43e-16,5;UBERON:0001066,2.43e-16,5;UBERON:0001468,2.43e-16,5;UBERON:0002242,2.30e-10,3;UBERON:0003068,2.30e-10,3;UBERON:0002328,2.30e-10,3;UBERON:0004880,2.30e-10,3;UBERON:0004905,4.61e-10,8;UBERON:0000982,4.61e-10,8;UBERON:0004770,4.61e-10,8;UBERON:0000075,1.00e-08,16;UBERON:0006444,1.13e-07,2;UBERON:0001995,1.13e-07,2;UBERON:0004715,1.13e-07,2;UBERON:0002385,2.06e-07,64;UBERON:0001015,2.06e-07,64;UBERON:0000383,2.06e-07,64|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,4.33182235360163,2.65117900582333,0,0.602694528023977,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0.71153252537342,1.33888245105868,0.402829317109147,0,0.24406205754817,0,0,0.535798369704479,0,0.788280363383256,0,0,0,0,0,0,1.98788780678127,0.12663051166458,1.19168262731897,1.72101972449288,0,0,0,0,2.48968828319813,0.269421344139376,0.980771418680752,0.302714855289863,0,0.234321431833797,0,0,1.19558944441441,0,0,0,2.44985005505872,1.10550885580591,2.89312187292143,0,0.494533858557114,0,0,1.0100166837244,0.375355559615893,1.93944880838928,0,0.612975591598039,0.600952235626387,0,0,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0,0,0,0,0.276149695926898,0.646584227275248,0,0.10075209822764,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.380508304469197,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.07333828582095,0.258543431515556,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0.710783897485092,0,1.20575750823834,0,0.099972991182057,0,0,0,0.718874566474748,0,0,1.44781306667579,1.84928690295345,2.50685348535854,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.20844685094452,2.00068208423871,4.34024037919577,0.623912584592421,0,0.157702415033935,0,1.20378439891088,0,1.03473071292505,1.32845119707087,0.553107505625109,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.280660094433074,0.512556597022804,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.739144404124282,1.55776328755086,0.116210378459959,0,0,0,2.18147451512753,3.82391452814106,3.40923478894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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr8:16612934..16612957,- | |||
|id=chr8:16612934..16612957,- | |||
|ontology_enrichment_celltype=CL:0000055!2.59e-11!180;CL:0000222!6.59e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002622;1.54e-10;3!CL:0002564;1.75e-10;3!CL:0002504;6.97e-10;3!CL:1000279;6.97e-10;3!CL:1000280;6.97e-10;3!CL:0000515;1.34e-09;3!CL:0002602;1.28e-07;2!CL:0002600;2.41e-07;2!CL:0000056;2.68e-07;4!CL:0002598;2.78e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,1.79e-10,3;CL:0002564,2.30e-10,3;CL:0002504,2.86e-10,3;CL:1000279,2.86e-10,3;CL:1000280,2.86e-10,3;CL:0002602,1.13e-07,2;CL:0002600,1.60e-07,2;CL:0000515,1.86e-07,4;CL:0000680,2.82e-07,58;CL:0000056,2.82e-07,58;CL:0000355,2.82e-07,58;CL:0002598,4.79e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000515;2.68e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.51e-10;3!DOID:127;1.51e-10;3!DOID:0060072;5.37e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.03e-10,3;DOID:127,2.03e-10,3;DOID:0060072,6.65e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.54e-08!83;UBERON:0002329!3.54e-08!83;UBERON:0003077!3.54e-08!83;UBERON:0003059!3.54e-08!83;UBERON:0007282!3.54e-08!83;UBERON:0009618!3.54e-08!83;UBERON:0007285!3.54e-08!83;UBERON:0002385!8.72e-08!63;UBERON:0001015!8.72e-08!63;UBERON:0000383!8.72e-08!63;UBERON:0005256!1.38e-07!143;UBERON:0002100!2.39e-07!216;UBERON:0001134!6.22e-07!61;UBERON:0002036!6.22e-07!61;UBERON:0003082!6.22e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;2.09e-16;5!UBERON:0002216;2.09e-16;5!UBERON:0011134;2.09e-16;5!UBERON:0002209;2.09e-16;5!UBERON:0002213;2.09e-16;5!UBERON:0007844;2.09e-16;5!UBERON:0011138;2.09e-16;5!UBERON:0001130;2.09e-16;5!UBERON:0001066;2.09e-16;5!UBERON:0001468;2.09e-16;5!UBERON:0002242;1.75e-10;3!UBERON:0004905;4.20e-10;8!UBERON:0000982;4.20e-10;8!UBERON:0004770;4.20e-10;8!UBERON:0000075;9.33e-09;16!UBERON:0006444;1.28e-07;2!UBERON:0001995;1.28e-07;2!UBERON:0004715;1.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,2.43e-16,5;UBERON:0002216,2.43e-16,5;UBERON:0011134,2.43e-16,5;UBERON:0002209,2.43e-16,5;UBERON:0002213,2.43e-16,5;UBERON:0005856,2.43e-16,5;UBERON:0005866,2.43e-16,5;UBERON:0005863,2.43e-16,5;UBERON:0007844,2.43e-16,5;UBERON:0011138,2.43e-16,5;UBERON:0001130,2.43e-16,5;UBERON:0001066,2.43e-16,5;UBERON:0001468,2.43e-16,5;UBERON:0002242,2.30e-10,3;UBERON:0003068,2.30e-10,3;UBERON:0002328,2.30e-10,3;UBERON:0004880,2.30e-10,3;UBERON:0004905,4.61e-10,8;UBERON:0000982,4.61e-10,8;UBERON:0004770,4.61e-10,8;UBERON:0000075,1.00e-08,16;UBERON:0006444,1.13e-07,2;UBERON:0001995,1.13e-07,2;UBERON:0004715,1.13e-07,2;UBERON:0002385,2.06e-07,64;UBERON:0001015,2.06e-07,64;UBERON:0000383,2.06e-07,64 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,4.33182235360163,2.65117900582333,0,0.602694528023977,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0.71153252537342,1.33888245105868,0.402829317109147,0,0.24406205754817,0,0,0.535798369704479,0,0.788280363383256,0,0,0,0,0,0,1.98788780678127,0.12663051166458,1.19168262731897,1.72101972449288,0,0,0,0,2.48968828319813,0.269421344139376,0.980771418680752,0.302714855289863,0,0.234321431833797,0,0,1.19558944441441,0,0,0,2.44985005505872,1.10550885580591,2.89312187292143,0,0.494533858557114,0,0,1.0100166837244,0.375355559615893,1.93944880838928,0,0.612975591598039,0.600952235626387,0,0,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0,0,0,0,0.276149695926898,0.646584227275248,0,0.10075209822764,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.380508304469197,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.07333828582095,0.258543431515556,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0.710783897485092,0,1.20575750823834,0,0.099972991182057,0,0,0,0.718874566474748,0,0,1.44781306667579,1.84928690295345,2.50685348535854,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.20844685094452,2.00068208423871,4.34024037919577,0.623912584592421,0,0.157702415033935,0,1.20378439891088,0,1.03473071292505,1.32845119707087,0.553107505625109,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.280660094433074,0.512556597022804,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.739144404124282,1.55776328755086,0.116210378459959,0,0,0,2.18147451512753,3.82391452814106,3.40923478894503,0,0.385076685522074,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.462145851343933,0,0.137836572484531,0.429680979473094,0.290033387828457,0.426133137080504,0,0,0,0,0,0,0.31481234683064,0,0,0,0.869932992075073,0,0,0.744316738719335,6.01120906965579,1.14378116354295,1.02359116524534,4.2793898803392,0,0,5.75591864266607,1.92175920815238,1.88499843753098,0.202182481573316,0,0,0,0,0,0.409499734223957,3.95935209470396,0,0,0,0,1.73632660280006,5.9030527684197,0.608731130888112,0.30982349809975,1.40847801266121,0,0.0982490410131212,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51619630252546,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0,3.73247505194169,0,0,0,0.493217028184668,0,4.44547960578548,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,1.46909527343233,0,0,0,0.707660516026713,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.52418000472609,0,0,0,0,0.678923115418936,0,0,0,0.19871461170299,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,2.88950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.788057072991982,0.577000469484979,0,0,0,0,0,0.76280561296425,2.17199840701485,5.18532894720761,2.28611152076586,0,0,0.511164065356265,0,0,0,0,0,0,0,1.28144895081234,1.72924735609633,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0.28984205722165,1.34329322598187,0.701139929541673,0,1.32582103692562,4.27665432979378,0,3.20376095755693,0.151230923763239,0.466311601748341,4.28779934969938,0.477890301491107,3.59842489730884,0.310525913752519,0,0,0,0.601030435988874,0,1.62748293281865,0.545545977607678,0.644463342254931,0.928067519756987,0.398095888698616,1.60011105865261,0,1.34699795506368,2.52369796457302,0.192619830407303,0.857766365499703,0,0,0.231522474323834,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.0642292250964595,0,0,0.205116364240755,0,0,0,0,0,0,0.183428598521679,0,0.381382095467167,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.79832133146375,0,1.71488009437418,0,0.0657727735628491,0,0,0.863424021355654,0,0,0,0,0,0,0,1.62737995515375,0.173858272302579,9.62053637676303,0,0,0,0,0.473328002922261,0.170426809518315,0,0.22910686854405,0.93061915699296,0,0,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0,0,2.69663153929296,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0,0.213233981900981,0.23806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| |||
|short_description=p@chr8:16612934..16612957,- | |||
}} |
Revision as of 04:18, 14 September 2013
Short description: | p@chr8:16612934..16612957, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:16612934..16612957, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 1.79e-10 | 3 |
nucleus pulposus cell of intervertebral disc | 2.30e-10 | 3 |
enteric smooth muscle cell | 2.86e-10 | 3 |
smooth muscle cell of large intestine | 2.86e-10 | 3 |
smooth muscle cell of colon | 2.86e-10 | 3 |
annulus pulposus cell | 1.13e-07 | 2 |
smooth muscle cell of trachea | 1.60e-07 | 2 |
skeletal muscle myoblast | 1.86e-07 | 4 |
muscle precursor cell | 2.82e-07 | 58 |
myoblast | 2.82e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.82e-07 | 58 |
bronchial smooth muscle cell | 4.79e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 2.43e-16 | 5 |
symphysis | 2.43e-16 | 5 |
nonsynovial joint | 2.43e-16 | 5 |
fibrous joint | 2.43e-16 | 5 |
cartilaginous joint | 2.43e-16 | 5 |
developing mesenchymal condensation | 2.43e-16 | 5 |
pre-cartilage condensation | 2.43e-16 | 5 |
cartilaginous condensation | 2.43e-16 | 5 |
cartilage element | 2.43e-16 | 5 |
post-cranial axial skeletal system | 2.43e-16 | 5 |
vertebral column | 2.43e-16 | 5 |
intervertebral disk | 2.43e-16 | 5 |
intervertebral joint | 2.43e-16 | 5 |
nucleus pulposus | 2.30e-10 | 3 |
axial mesoderm | 2.30e-10 | 3 |
notochord | 2.30e-10 | 3 |
chordamesoderm | 2.30e-10 | 3 |
articulation | 4.61e-10 | 8 |
skeletal joint | 4.61e-10 | 8 |
articular system | 4.61e-10 | 8 |
subdivision of skeletal system | 1.00e-08 | 16 |
annulus fibrosus | 1.13e-07 | 2 |
fibrocartilage | 1.13e-07 | 2 |
annulus fibrosus disci intervertebralis | 1.13e-07 | 2 |
muscle tissue | 2.06e-07 | 64 |
musculature | 2.06e-07 | 64 |
musculature of body | 2.06e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.03e-10 | 3 |
leiomyoma | 2.03e-10 | 3 |
benign neoplasm | 6.65e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.