FFCP PHASE1:Hg19::chr9:132427883..132427951,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51450|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21338|TSSclassifier=S|UniProt=Q99811|association_with_transcript=0bp_to_ENST00000372469,NM_016307,uc004byh.2_5end|description=CAGE_peak_2_at_PRRX2_5end|id=chr9:132427883..132427951,+|ontology_enrichment_celltype=CL:0000055!1.14e-30!180;CL:0000057!6.39e-23!75;CL:0002620!3.63e-11!23;CL:0002334!2.92e-08!12;CL:0000499!1.59e-07!27;CL:0000327!8.45e-07!14|ontology_enrichment_celltype_v019=CL:0002620;9.93e-15;23!CL:0000057;1.42e-10;73!CL:0002334;2.32e-10;12!CL:0000153;3.68e-08;9!CL:0000447;3.68e-08;9!CL:0000062;5.05e-08;9!CL:0000499;4.42e-07;28|ontology_enrichment_celltype_v019_2=CL:0000057,2.98e-26,76;CL:0002620,8.81e-15,23;CL:0002334,2.21e-10,12;CL:0000153,2.94e-08,9;CL:0000447,2.94e-08,9;CL:0000062,1.97e-07,11;CL:0000375,1.97e-07,11;CL:0000335,1.97e-07,11;CL:0000499,3.49e-07,28|ontology_enrichment_development_v019=CL:0000335;1.99e-07;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!6.90e-16!95;UBERON:0002199!3.39e-11!45;UBERON:0002416!3.39e-11!45;UBERON:0000914!8.97e-10!83;UBERON:0002329!8.97e-10!83;UBERON:0003077!8.97e-10!83;UBERON:0003059!8.97e-10!83;UBERON:0007282!8.97e-10!83;UBERON:0009618!8.97e-10!83;UBERON:0007285!8.97e-10!83;UBERON:0002097!2.47e-09!40;UBERON:0000475!5.57e-08!365;UBERON:0004290!2.96e-07!70;UBERON:0000468!9.77e-07!659|ontology_enrichment_uberon_v019=UBERON:0002199;1.93e-09;46!UBERON:0002416;1.93e-09;46!UBERON:0002097;4.27e-09;41!UBERON:0003102;8.38e-09;50!UBERON:0001434;2.49e-08;36!UBERON:0004457;4.76e-08;9!UBERON:0000042;4.76e-08;9!UBERON:0004905;8.07e-08;8!UBERON:0000982;8.07e-08;8!UBERON:0004770;8.07e-08;8!UBERON:0000075;3.51e-07;16!UBERON:0002384;6.27e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.28e-17,99;UBERON:0002199,3.83e-14,46;UBERON:0002416,3.83e-14,46;UBERON:0002097,1.04e-11,41;UBERON:0004905,8.45e-08,8;UBERON:0000982,8.45e-08,8;UBERON:0004770,8.45e-08,8;UBERON:0007524,1.33e-07,73;UBERON:0002329,2.38e-07,71;UBERON:0003059,2.38e-07,71;UBERON:0007282,2.38e-07,71;UBERON:0004290,2.38e-07,71;UBERON:0009618,2.38e-07,71;UBERON:0000075,3.63e-07,16;UBERON:0003077,4.22e-07,72;UBERON:0007285,4.22e-07,72;UBERON:0000486,4.43e-07,83|phase1_expression=25.2532947186074,15.8434387679328,10.1487170949099,28.0205235388765,2.23480547213644,9.59572376510406,7.59899634504932,5.05375898741465,1.56711376919903,0.245733936501509,0,0,0,24.5057378860892,15.575676659212,0,0,0,0,2.21617904538218,5.71201935483908,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,3.35350429851818,1.02290049474824,44.4570157433017,75.2006865953834,46.6405791053852,4.7717156823066,18.9787599418028,0.0945348171640679,0,0.087834785693126,1.0478326039817,0.364295288292542,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0,0,0.225222960966644,0,0,0,0,0,0,15.9031024542502,6.45815609489357,0.397227542439656,4.58938593198102,7.09336764396714,5.04609840128076,0,0,0.311211035399766,0,0.163461903113459,0,0.576175924479999,13.1220001826926,3.74592092196385,5.70471821544449,17.4854956245607,2.58355897016283,2.10434827678571,1.68540968042698,16.3323337003915,13.1432719523592,30.9977343527296,54.6481314349745,84.812556742545,1.82032272387605,1.43723628363248,12.793544660509,10.1346001096291,10.528436388399,62.7737997859598,77.541412337152,73.015696628606,0.226864366320042,36.7748753162167,27.9760179352323,33.4852403832108,47.4143931813356,26.8967101312326,26.7946161647454,40.387357823955,32.9113847870469,64.0161123909075,55.2829965594611,35.8074105718544,52.373322409295,41.1811127319273,52.1895868819177,96.1408558400465,0,0,0,2.80539524098069,3.18071443971565,3.71820617182459,3.00617059544574,4.54177531576131,2.55484151353081,46.9348596989448,52.7457569318166,59.3980161815666,11.1448302727675,5.77503585335668,0.236613600079688,0,0.241011029883482,0.110293972732394,0.435758888184812,0.237270619111097,0.404493924480493,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0,9.43622956641891,0,0,0,0,21.5033481504814,8.31947828223663,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4486426652716,0,1.24396869324463,0.432359860250884,0.6312121671319,1.20645999155121,0,0,3.4214489204541,1.85089486865982,0,0,0.672786506072164,1.74384027533312,0.66004457238855,0.387815147273333,21.4593867511129,0,1.32969058292435,0,7.9734286021264,17.0218958427934,6.39413229638638,0.142977993658148,0,0,0,0,0,0,0,0.399891964728228,0,0,0,5.99062138728957,22.9723871668228,0,1.44781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,29.93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630858,0,0.785233868459781,0,2.113278637917,24.8093587444213,0,0.322289439867886,0,1.42843150884526,0,0,0,0.458729283404541,0.143339583151451,16.0926993437048,0.271965960763659,0.436350690340377,2.645134202577,71.795038506183,78.5698568673411,45.4257890229979,0.126166424835079,2.29457701123761,1.90047751517155,5.71137446555098,0.801652215796681,2.48116228744081,5.26485832513988,2.34913964476542,1.07185652062471,0,0,1.27940389140589,5.23741749220229,0.0645889098360061,0.496597714366863,0,3.37329938874274,4.44657815708082,4.57205170583619,4.79126621519393,2.08791364345221,6.88533171769693,13.6390746183865,0.0814032686109745,2.88163833869832,69.5060216232984,0.0898252021065869,2.34640942403454,0.366724332548599,2.84827324821017,7.32332451604064,3.42165449104745,0|short_description=p2@PRRX2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=51450 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21338 | |||
|TSSclassifier=S | |||
|UniProt=Q99811 | |||
|association_with_transcript=0bp_to_ENST00000372469,NM_016307,uc004byh.2_5end | |||
|description=CAGE_peak_2_at_PRRX2_5end | |||
|id=chr9:132427883..132427951,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.14e-30!180;CL:0000057!6.39e-23!75;CL:0002620!3.63e-11!23;CL:0002334!2.92e-08!12;CL:0000499!1.59e-07!27;CL:0000327!8.45e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0002620;9.93e-15;23!CL:0000057;1.42e-10;73!CL:0002334;2.32e-10;12!CL:0000153;3.68e-08;9!CL:0000447;3.68e-08;9!CL:0000062;5.05e-08;9!CL:0000499;4.42e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.98e-26,76;CL:0002620,8.81e-15,23;CL:0002334,2.21e-10,12;CL:0000153,2.94e-08,9;CL:0000447,2.94e-08,9;CL:0000062,1.97e-07,11;CL:0000375,1.97e-07,11;CL:0000335,1.97e-07,11;CL:0000499,3.49e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000335;1.99e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!6.90e-16!95;UBERON:0002199!3.39e-11!45;UBERON:0002416!3.39e-11!45;UBERON:0000914!8.97e-10!83;UBERON:0002329!8.97e-10!83;UBERON:0003077!8.97e-10!83;UBERON:0003059!8.97e-10!83;UBERON:0007282!8.97e-10!83;UBERON:0009618!8.97e-10!83;UBERON:0007285!8.97e-10!83;UBERON:0002097!2.47e-09!40;UBERON:0000475!5.57e-08!365;UBERON:0004290!2.96e-07!70;UBERON:0000468!9.77e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;1.93e-09;46!UBERON:0002416;1.93e-09;46!UBERON:0002097;4.27e-09;41!UBERON:0003102;8.38e-09;50!UBERON:0001434;2.49e-08;36!UBERON:0004457;4.76e-08;9!UBERON:0000042;4.76e-08;9!UBERON:0004905;8.07e-08;8!UBERON:0000982;8.07e-08;8!UBERON:0004770;8.07e-08;8!UBERON:0000075;3.51e-07;16!UBERON:0002384;6.27e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.28e-17,99;UBERON:0002199,3.83e-14,46;UBERON:0002416,3.83e-14,46;UBERON:0002097,1.04e-11,41;UBERON:0004905,8.45e-08,8;UBERON:0000982,8.45e-08,8;UBERON:0004770,8.45e-08,8;UBERON:0007524,1.33e-07,73;UBERON:0002329,2.38e-07,71;UBERON:0003059,2.38e-07,71;UBERON:0007282,2.38e-07,71;UBERON:0004290,2.38e-07,71;UBERON:0009618,2.38e-07,71;UBERON:0000075,3.63e-07,16;UBERON:0003077,4.22e-07,72;UBERON:0007285,4.22e-07,72;UBERON:0000486,4.43e-07,83 | |||
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| |||
|short_description=p2@PRRX2 | |||
}} |
Revision as of 07:47, 14 September 2013
Short description: | p2@PRRX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PRRX2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372469, NM_016307, uc004byh.2_5end |
EntrezGene: | PRRX2 |
HGNC: | 21338 |
UniProt: | Q99811 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.98e-26 | 76 |
skin fibroblast | 8.81e-15 | 23 |
preadipocyte | 2.21e-10 | 12 |
GAG secreting cell | 2.94e-08 | 9 |
carbohydrate secreting cell | 2.94e-08 | 9 |
osteoblast | 1.97e-07 | 11 |
osteoprogenitor cell | 1.97e-07 | 11 |
mesenchyme condensation cell | 1.97e-07 | 11 |
stromal cell | 3.49e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.28e-17 | 99 |
integument | 3.83e-14 | 46 |
integumental system | 3.83e-14 | 46 |
skin of body | 1.04e-11 | 41 |
articulation | 8.45e-08 | 8 |
skeletal joint | 8.45e-08 | 8 |
articular system | 8.45e-08 | 8 |
dense mesenchyme tissue | 1.33e-07 | 73 |
somite | 2.38e-07 | 71 |
presomitic mesoderm | 2.38e-07 | 71 |
presumptive segmental plate | 2.38e-07 | 71 |
dermomyotome | 2.38e-07 | 71 |
trunk paraxial mesoderm | 2.38e-07 | 71 |
subdivision of skeletal system | 3.63e-07 | 16 |
paraxial mesoderm | 4.22e-07 | 72 |
presumptive paraxial mesoderm | 4.22e-07 | 72 |
multilaminar epithelium | 4.43e-07 | 83 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.