FFCP PHASE1:Mm9::chr9:57684520..57684612,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56380|HGNC=|MCL_coexpression_id=36|UniProt=F8WIN2,Q9Z1N7,Q3V3M5|association_with_transcript=0bp_to_ENSMUST00000098686,ENSMUST00000164035,ENSMUST00000167670,uc009pvv.1_5end|description=CAGE_peak_1_at_Arid3b_5end|id=chr9:57684520..57684612,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.88e-10!29;UBERON:0002193!4.12e-09!48;UBERON:0002370!5.72e-09!23;UBERON:0000974!5.72e-09!23;UBERON:0004807!5.72e-09!23;UBERON:0005058!5.72e-09!23;UBERON:0003351!5.72e-09!23;UBERON:0009113!5.72e-09!23;UBERON:0003295!5.72e-09!23;UBERON:0009722!5.72e-09!23;UBERON:0005562!5.72e-09!23;UBERON:0007690!5.72e-09!23;UBERON:0003408!5.72e-09!24;UBERON:0002390!2.08e-08!45;UBERON:0003061!2.08e-08!45;UBERON:0006562!4.50e-08!24;UBERON:0001557!4.50e-08!24;UBERON:0001042!4.50e-08!24;UBERON:0008814!4.50e-08!24;UBERON:0009145!4.50e-08!24;UBERON:0002405!3.14e-07!70;UBERON:0005057!5.38e-07!51;UBERON:0001004!6.47e-07!42;UBERON:0000065!7.77e-07!41|ontology_enrichment_uberon_v019_2=UBERON:0007811,1.15e-11,36;UBERON:0004177,2.88e-10,29;UBERON:0005057,2.88e-10,29;UBERON:0000153,3.54e-09,43;UBERON:0002193,4.17e-09,48;UBERON:0002405,4.17e-09,48;UBERON:0000077,4.19e-09,35;UBERON:0002370,5.72e-09,23;UBERON:0000974,5.72e-09,23;UBERON:0004807,5.72e-09,23;UBERON:0005058,5.72e-09,23;UBERON:0003351,5.72e-09,23;UBERON:0009113,5.72e-09,23;UBERON:0003295,5.72e-09,23;UBERON:0009722,5.72e-09,23;UBERON:0005562,5.72e-09,23;UBERON:0007690,5.72e-09,23;UBERON:0003408,5.72e-09,24;UBERON:0002390,2.11e-08,45;UBERON:0003061,2.11e-08,45;UBERON:0006562,4.49e-08,24;UBERON:0001557,4.49e-08,24;UBERON:0001042,4.49e-08,24;UBERON:0008814,4.49e-08,24;UBERON:0009145,4.49e-08,24;UBERON:0001048,3.55e-07,134;UBERON:0001004,6.47e-07,42;UBERON:0000065,7.76e-07,41|phase1_expression=10.4096750618116,10.4692622291808,10.9199817453489,13.3084252975005,22.0394121176393,4.53274034162102,7.00837921786577,32.7973241541604,22.2446180999633,37.9184532641629,7.53359060192222,8.37607669451032,33.3841423365851,40.3882259175768,10.9926221399169,14.3757439846776,7.69518065940961,48.4234423824895,46.0704496915282,38.6194583136207,10.0351082378262,13.9007331681239,5.22399578277871,10.5594999043648,8.02932483735095,8.6134794617253,6.46142994238612,4.95583835177545,3.99049180858385,6.5527833737582,2.43903561720835,20.3209815507082,22.1423323530445,0,2.3108129580102,2.1610503896604,1.63335485009895,63.1982762412731,27.346737058333,34.5525671022707,64.7054636834116,42.3488200674236,56.3192009516138,0.881277725829041,1.11514624341466,0.734187008646726,4.69434806608824,1.96222640742402,1.75748946187577,1.94429899074283,1.53985063787899,0,36.912173332702,25.3876749703971,30.2484419228218,2.05807548828758,2.29226751951005,2.06268836910977,5.05791152148994,6.34789175126439,3.80298842103708,1.0165335962074,1.77858959222228,9.44894703145469,7.9109309005358,8.5257613793532,5.69240209984969,5.76327457982332,5.80661828927475,2.97013064329719,4.20649922702764,3.71346279724945,4.63823935998388,6.24703075996266,6.51749202924007,11.0306254393203,5.50579404996943,3.57524546638526,2.91852413186863,7.78129097608144,4.57438218012048,5.73004707612436,2.79182999001381,3.93933827022176,3.81995619442025,2.94628585473668,3.84403538157578,7.26957838718672,2.49896437999507,3.85414956544606,7.53647670624362,1.72084775396277,2.719885334831,1.61910957491345,3.89865850468601,1.79210754838934,6.74133216632409,1.36344258062446,2.85764605063156,2.12003744706204,11.4083170019111,3.84979432242953,17.8363667794652,7.11066703153331,5.19578498426914,3.54703811665138,1.51657333504435,6.62266502370548,69.9132285847364,6.53145411885229,8.84775166507293,7.30717147949139,7.14908041493781,4.6724018571313,4.11560474974967,1.50799909595611,39.3039998697654,7.08536848907567,8.84610551949874,7.27950824763341,8.39197770149496,9.21262980956922,11.1835056730873,7.02673912827713,9.00620839297857,10.2182822083437,2.99537811264801,2.99951365496704,4.19331749341113,2.99581278809645,19.2150253183823,5.15182843662744,11.6462294528825,6.90431734791892,6.02585329222724,5.353961681236,2.13862664085664,7.71323217782577,5.55990068554084,14.3100462002802,21.079511759958,12.4147136394075,15.48534316326,17.0296444154358,18.7780737657665,22.163673609279,18.1781345645874,37.5119887571573,31.472926968195,12.2918952109083,5.80638709741031,3.06874025398605,2.50242524303038,4.52727816478817,5.14455341019859,12.9372273432021,0.702213187313235,3.08817488537658,2.27330799516474,29.4118597000413,19.2311369184499,9.18316513451176,10.8902578369197,7.08351234290654,7.0962871928194,7.44108623201305,7.77992864058896,6.30532848782715,6.7469538464527,6.40253109908471,5.10733500138891,4.5321996101853,6.14740322814942,5.09984391289413,7.99101804543684,5.9684675179985,7.26921322564356,5.81791246659797,10.4511242762265,12.7730169523241,6.70110798874885,6.6555563125703,8.67274370994994,7.60902504450237,9.01605216934572,6.0938613247884,8.79673230800943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| ||
|EntrezGene=56380 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|UniProt=F8WIN2,Q9Z1N7,Q3V3M5 | |||
|association_with_transcript=0bp_to_ENSMUST00000098686,ENSMUST00000164035,ENSMUST00000167670,uc009pvv.1_5end | |||
|description=CAGE_peak_1_at_Arid3b_5end | |||
|id=chr9:57684520..57684612,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.88e-10!29;UBERON:0002193!4.12e-09!48;UBERON:0002370!5.72e-09!23;UBERON:0000974!5.72e-09!23;UBERON:0004807!5.72e-09!23;UBERON:0005058!5.72e-09!23;UBERON:0003351!5.72e-09!23;UBERON:0009113!5.72e-09!23;UBERON:0003295!5.72e-09!23;UBERON:0009722!5.72e-09!23;UBERON:0005562!5.72e-09!23;UBERON:0007690!5.72e-09!23;UBERON:0003408!5.72e-09!24;UBERON:0002390!2.08e-08!45;UBERON:0003061!2.08e-08!45;UBERON:0006562!4.50e-08!24;UBERON:0001557!4.50e-08!24;UBERON:0001042!4.50e-08!24;UBERON:0008814!4.50e-08!24;UBERON:0009145!4.50e-08!24;UBERON:0002405!3.14e-07!70;UBERON:0005057!5.38e-07!51;UBERON:0001004!6.47e-07!42;UBERON:0000065!7.77e-07!41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007811,1.15e-11,36;UBERON:0004177,2.88e-10,29;UBERON:0005057,2.88e-10,29;UBERON:0000153,3.54e-09,43;UBERON:0002193,4.17e-09,48;UBERON:0002405,4.17e-09,48;UBERON:0000077,4.19e-09,35;UBERON:0002370,5.72e-09,23;UBERON:0000974,5.72e-09,23;UBERON:0004807,5.72e-09,23;UBERON:0005058,5.72e-09,23;UBERON:0003351,5.72e-09,23;UBERON:0009113,5.72e-09,23;UBERON:0003295,5.72e-09,23;UBERON:0009722,5.72e-09,23;UBERON:0005562,5.72e-09,23;UBERON:0007690,5.72e-09,23;UBERON:0003408,5.72e-09,24;UBERON:0002390,2.11e-08,45;UBERON:0003061,2.11e-08,45;UBERON:0006562,4.49e-08,24;UBERON:0001557,4.49e-08,24;UBERON:0001042,4.49e-08,24;UBERON:0008814,4.49e-08,24;UBERON:0009145,4.49e-08,24;UBERON:0001048,3.55e-07,134;UBERON:0001004,6.47e-07,42;UBERON:0000065,7.76e-07,41 | |||
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| |||
|short_description=p1@Arid3b | |||
}} |
Revision as of 18:20, 14 September 2013
Short description: | p1@Arid3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Arid3b_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 0bp_to_ENSMUST00000098686, ENSMUST00000164035, ENSMUST00000167670, uc009pvv.1_5end |
EntrezGene: | Arid3b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
craniocervical region | 1.15e-11 | 36 |
hemopoietic organ | 2.88e-10 | 29 |
immune organ | 2.88e-10 | 29 |
anterior region of body | 3.54e-09 | 43 |
hemolymphoid system | 4.17e-09 | 48 |
immune system | 4.17e-09 | 48 |
mixed endoderm/mesoderm-derived structure | 4.19e-09 | 35 |
thymus | 5.72e-09 | 23 |
neck | 5.72e-09 | 23 |
respiratory system epithelium | 5.72e-09 | 23 |
hemolymphoid system gland | 5.72e-09 | 23 |
pharyngeal epithelium | 5.72e-09 | 23 |
thymic region | 5.72e-09 | 23 |
pharyngeal gland | 5.72e-09 | 23 |
entire pharyngeal arch endoderm | 5.72e-09 | 23 |
thymus primordium | 5.72e-09 | 23 |
early pharyngeal endoderm | 5.72e-09 | 23 |
gland of gut | 5.72e-09 | 24 |
hematopoietic system | 2.11e-08 | 45 |
blood island | 2.11e-08 | 45 |
pharynx | 4.49e-08 | 24 |
upper respiratory tract | 4.49e-08 | 24 |
chordate pharynx | 4.49e-08 | 24 |
pharyngeal arch system | 4.49e-08 | 24 |
pharyngeal region of foregut | 4.49e-08 | 24 |
primordium | 3.55e-07 | 134 |
respiratory system | 6.47e-07 | 42 |
respiratory tract | 7.76e-07 | 41 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.