FFCP PHASE1:Hg19::chr1:62661928..62661962,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr1:62661928..62661962,+ | |||
|id=chr1:62661928..62661962,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.16e-36!5;CL:0000039!4.04e-17!7;CL:0000586!4.04e-17!7;CL:0002536!7.08e-15!2;CL:0002537!2.86e-13!5;CL:0000540!9.42e-12!6;CL:0000031!9.42e-12!6;CL:0000404!9.42e-12!6;CL:0000047!6.22e-09!8;CL:0002336!3.79e-08!1;CL:0002261!3.79e-08!1;CL:0002170!3.79e-08!1;CL:0000148!4.10e-07!10;CL:0000541!4.10e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002322;9.97e-66;5!CL:0000039;1.43e-30;7!CL:0000586;1.43e-30;7!CL:0002321;4.94e-22;15!CL:0000540;1.20e-20;6!CL:0000404;1.20e-20;6!CL:0000148;1.89e-12;10!CL:0000147;4.68e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.07e-65,5;CL:0000039,1.54e-30,7;CL:0000586,1.54e-30,7;CL:0000540,1.16e-20,6;CL:0000031,1.16e-20,6;CL:0000404,1.16e-20,6;CL:0000047,1.16e-15,8;CL:0000148,1.97e-12,10;CL:0000541,1.97e-12,10;CL:0000147,4.81e-09,14;CL:0000133,1.62e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.58e-21;10!UBERON:0005564;1.58e-21;10!CL:0000031;1.20e-20;6 | |||
|ontology_enrichment_disease=DOID:3095!1.54e-11!22;DOID:2994!1.54e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.56e-15;22!DOID:2994;3.56e-15;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.67e-15,22;DOID:2994,3.67e-15,22 | |||
|ontology_enrichment_uberon=UBERON:0000305!7.65e-25!7;UBERON:0005631!1.35e-23!14;UBERON:0000158!1.35e-23!14;UBERON:0000473!8.95e-23!8;UBERON:0004871!9.89e-22!8;UBERON:0003135!1.57e-16!11;UBERON:0000478!1.87e-13!24;UBERON:0000991!5.63e-12!21;UBERON:0009196!5.63e-12!21;UBERON:0009117!5.63e-12!21;UBERON:0005564!5.63e-12!21;UBERON:0004176!2.08e-11!22;UBERON:0003133!1.84e-08!48;UBERON:0001154!2.29e-08!1;UBERON:0001153!2.29e-08!1;UBERON:0003101!3.64e-08!22;UBERON:0000079!3.64e-08!22;UBERON:0001987!7.19e-08!4;UBERON:0004340!7.19e-08!4;UBERON:0004923!9.98e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.31e-27;8!UBERON:0003135;1.32e-19;11!UBERON:0000922;3.23e-13;49!UBERON:0000991;2.06e-10;21!UBERON:0003101;5.98e-10;22!UBERON:0000079;5.98e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.88e-27,8;UBERON:0003135,1.39e-19,11;UBERON:0000991,2.11e-10,21;UBERON:0009196,2.11e-10,21;UBERON:0009117,2.11e-10,21;UBERON:0005564,2.11e-10,21;UBERON:0004176,6.12e-10,22;UBERON:0003101,6.12e-10,22;UBERON:0000079,6.12e-10,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.7830287926443,17.0963401134716,13.2461094871251,3.73179798055334,12.868363394657,10.9493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84991942105343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0.921482106297696,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8957329864114,16.6422718282653,20.3565765634301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252332849670158,35.0742486003463,0,12.2386595690378,16.0330443159336,22.6061452855718,3.76061308938563,0.303114792872958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:62661928..62661962,+ | |||
}} |
Revision as of 18:47, 10 January 2014
Short description: | p@chr1:62661928..62661962, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:62661928..62661962, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.07e-65 | 5 |
germ line cell | 1.54e-30 | 7 |
germ cell | 1.54e-30 | 7 |
neuron | 1.16e-20 | 6 |
neuroblast | 1.16e-20 | 6 |
electrically signaling cell | 1.16e-20 | 6 |
neuronal stem cell | 1.16e-15 | 8 |
melanocyte | 1.97e-12 | 10 |
melanoblast | 1.97e-12 | 10 |
pigment cell | 4.81e-09 | 14 |
neurectodermal cell | 1.62e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 8.88e-27 | 8 |
male reproductive organ | 1.39e-19 | 11 |
gonad | 2.11e-10 | 21 |
indifferent external genitalia | 2.11e-10 | 21 |
indifferent gonad | 2.11e-10 | 21 |
gonad primordium | 2.11e-10 | 21 |
external genitalia | 6.12e-10 | 22 |
male organism | 6.12e-10 | 22 |
male reproductive system | 6.12e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.67e-15 | 22 |
germ cell cancer | 3.67e-15 | 22 |