FFCP PHASE1:Hg19::chr1:160160001..160160019,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=844 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1512 | |||
|TSSclassifier=not | |||
|UniProt=P31415 | |||
|association_with_transcript=-265bp_to_ENST00000368079,NM_001231,uc010pja.1_5end | |||
|coexpression_cluster_id=C196 | |||
|description=CAGE_peak_9_at_CASQ1_5end | |||
|id=chr1:160160001..160160019,+ | |||
|ontology_enrichment_celltype=CL:0000039!7.59e-19!7;CL:0000586!7.59e-19!7;CL:0002322!2.19e-18!5;CL:0000047!5.63e-16!8;CL:0000540!6.00e-15!6;CL:0000031!6.00e-15!6;CL:0000404!6.00e-15!6;CL:0002605!1.72e-11!3;CL:0002319!2.56e-11!25;CL:0000133!2.79e-08!59;CL:0000128!3.31e-08!7;CL:0000126!3.31e-08!7;CL:0000127!3.31e-08!7;CL:0002453!3.31e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;4.23e-29;7!CL:0000586;4.23e-29;7!CL:0002322;1.77e-18;5!CL:0000047;1.75e-12;2!CL:0002605;1.26e-08;3!CL:0002321;8.58e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.50e-29,7;CL:0000586,3.50e-29,7;CL:0002322,2.11e-18,5;CL:0002605,1.21e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.28e-20;10!UBERON:0005564;1.28e-20;10!UBERON:0005062;8.85e-07;4!UBERON:0007284;8.85e-07;4 | |||
|ontology_enrichment_disease=DOID:3095!1.83e-11!22;DOID:2994!1.83e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.40e-10;22!DOID:2994;9.40e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.86e-10,22;DOID:2994,8.86e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.19e-11!8;UBERON:0003135!2.32e-08!11;UBERON:0000341!5.21e-08!2;UBERON:0001017!8.85e-08!82;UBERON:0005743!2.94e-07!86;UBERON:0000073!3.96e-07!94;UBERON:0001016!3.96e-07!94;UBERON:0007023!6.00e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.44e-25;8!UBERON:0002146;3.67e-23;1!UBERON:0005623;3.67e-23;1!UBERON:0003135;8.15e-19;11!UBERON:0000922;1.19e-10;49!UBERON:0000991;3.46e-10;21!UBERON:0003101;9.40e-10;22!UBERON:0000079;9.40e-10;22!UBERON:0001723;1.26e-08;3!UBERON:0003978;1.26e-08;3!UBERON:0000946;1.26e-08;3!UBERON:0001033;1.26e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.22e-25,8;UBERON:0002146,2.10e-23,1;UBERON:0005623,2.10e-23,1;UBERON:0003135,7.22e-19,11;UBERON:0000991,3.25e-10,21;UBERON:0009196,3.25e-10,21;UBERON:0009117,3.25e-10,21;UBERON:0005564,3.25e-10,21;UBERON:0004176,8.86e-10,22;UBERON:0003101,8.86e-10,22;UBERON:0000079,8.86e-10,22;UBERON:0003978,1.04e-08,3;UBERON:0009751,1.04e-08,3;UBERON:0000946,1.04e-08,3;UBERON:0002523,1.04e-08,3;UBERON:0005983,1.04e-08,3;UBERON:0002165,1.04e-08,3;UBERON:0002062,1.04e-08,3;UBERON:0007280,1.04e-08,3;UBERON:0001723,1.51e-08,3;UBERON:0001033,1.51e-08,3;UBERON:0010056,1.51e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,1.43117993565528,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21973706129595,0.132529768321485,1.04574548582567,0.829288440122964,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28685161800217,0,0.773288812777695,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.628303510868405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,1.60412296808179,0,0,0,0.669514372325618,0.403100834920358,0,0,0,0,0,0,0,0,0,0.482259445395058,0.275078873194468,0.415440338029185,0,0,0,0.335434687599266,0,0,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0.261906694481422,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513314034281235,0,0,0,0,0,0.11294608203896,0.219881033490858,0,0,0,0,0.490296643507811,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.109265571963696,0,7.44518457116467,1.60330443159336,2.48116228744081,0.752122617877125,0,0.267964130156178,0,0,0.426467963801962,0.23806443146374,0,0,0,0,0,0.217716747896961,1.02669990325584,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@CASQ1 | |||
}} |
Revision as of 21:44, 10 January 2014
Short description: | p9@CASQ1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_CASQ1_5end |
Coexpression cluster: | C196_testicular_iPS_H9_teratocarcinoma_HES3GFP_choriocarcinoma_endometrial |
Association with transcript: | -265bp_to_ENST00000368079, NM_001231, uc010pja.1_5end |
EntrezGene: | CASQ1 |
HGNC: | 1512 |
UniProt: | P31415 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.50e-29 | 7 |
germ cell | 3.50e-29 | 7 |
embryonic stem cell | 2.11e-18 | 5 |
astrocyte of the cerebral cortex | 1.21e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.22e-25 | 8 |
pulmonary valve | 2.10e-23 | 1 |
semi-lunar valve | 2.10e-23 | 1 |
male reproductive organ | 7.22e-19 | 11 |
gonad | 3.25e-10 | 21 |
indifferent external genitalia | 3.25e-10 | 21 |
indifferent gonad | 3.25e-10 | 21 |
gonad primordium | 3.25e-10 | 21 |
external genitalia | 8.86e-10 | 22 |
male organism | 8.86e-10 | 22 |
male reproductive system | 8.86e-10 | 22 |
valve | 1.04e-08 | 3 |
cardiac mesenchyme | 1.04e-08 | 3 |
cardial valve | 1.04e-08 | 3 |
tunica intima | 1.04e-08 | 3 |
heart layer | 1.04e-08 | 3 |
endocardium | 1.04e-08 | 3 |
endocardial cushion | 1.04e-08 | 3 |
presumptive endocardium | 1.04e-08 | 3 |
tongue | 1.51e-08 | 3 |
gustatory system | 1.51e-08 | 3 |
future tongue | 1.51e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.86e-10 | 22 |
germ cell cancer | 8.86e-10 | 22 |