FFCP PHASE1:Hg19::chr12:52844247..52844256,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_at_chr12:52844247..52844256,- | |||
|id=chr12:52844247..52844256,- | |||
|ontology_enrichment_celltype=CL:0002076!7.09e-41!43;CL:0000223!1.96e-28!59;CL:0002368!9.42e-27!13;CL:0000622!8.08e-23!5;CL:0002159!3.62e-22!13;CL:0002251!4.83e-19!21;CL:0000154!5.55e-19!6;CL:0002202!2.93e-18!9;CL:0002632!2.93e-18!9;CL:0000066!1.98e-15!254;CL:0002328!3.10e-15!3;CL:0000362!9.24e-15!8;CL:0000068!3.11e-14!3;CL:0000069!3.11e-14!3;CL:0000307!3.11e-14!3;CL:0000377!3.11e-14!3;CL:0002623!7.31e-14!3;CL:0000150!1.43e-12!9;CL:0000240!1.59e-12!6;CL:0000311!1.59e-12!6;CL:0000079!1.59e-12!6;CL:0000237!1.59e-12!6;CL:0000036!1.59e-12!6;CL:0000357!1.59e-12!6;CL:0000114!1.59e-12!6;CL:0002327!2.59e-11!4;CL:0000317!1.00e-10!2;CL:1000448!1.00e-10!2;CL:0002308!1.00e-10!2;CL:0002140!1.00e-10!2;CL:0000575!1.84e-10!2;CL:0002077!5.77e-10!33;CL:0000220!1.12e-09!246;CL:0002321!1.52e-09!248;CL:0000076!1.59e-09!62;CL:0000312!4.60e-09!5;CL:0002231!3.59e-07!3;CL:0002621!6.55e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002159;6.07e-38;14!CL:0002328;3.25e-34;3!CL:0000362;1.21e-30;9!CL:0000317;1.78e-23;2!CL:1000448;1.78e-23;2!CL:0002308;1.78e-23;2!CL:0002140;1.78e-23;2!CL:0000312;2.43e-20;5!CL:0002202;3.45e-20;9!CL:0002632;3.45e-20;9!CL:0000240;4.62e-17;6!CL:0000311;4.62e-17;6!CL:0000079;4.62e-17;6!CL:0000237;4.62e-17;6!CL:0002231;2.21e-15;3!CL:0002077;8.52e-15;34!CL:0002368;4.57e-14;13!CL:0002327;3.55e-12;4!CL:0002252;3.64e-12;1!CL:0002076;4.46e-10;42!CL:0000622;5.69e-10;5!CL:0000154;1.87e-08;6!CL:0000575;6.07e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,6.97e-38,14;CL:0002328,3.07e-34,3;CL:0000362,1.65e-30,9;CL:0000317,1.99e-23,2;CL:1000448,1.99e-23,2;CL:0002308,1.99e-23,2;CL:0002140,1.99e-23,2;CL:0000312,3.17e-20,5;CL:0002202,3.54e-20,9;CL:0002632,3.54e-20,9;CL:0000240,5.76e-17,6;CL:0000311,5.76e-17,6;CL:0000079,5.76e-17,6;CL:0000237,5.76e-17,6;CL:0000036,5.76e-17,6;CL:0000357,5.76e-17,6;CL:0000114,5.76e-17,6;CL:0002231,2.21e-15,3;CL:0002077,2.75e-15,34;CL:0002368,4.65e-14,13;CL:0002076,2.99e-12,42;CL:0002252,3.08e-12,1;CL:0002327,3.27e-12,4;CL:0000622,5.95e-10,5;CL:0000066,5.05e-09,253;CL:0000223,1.08e-08,58;CL:0000154,1.94e-08,6;CL:0000575,6.07e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000357;4.62e-17;6!CL:0000114;4.62e-17;6!UBERON:0008814;4.83e-07;2!UBERON:0010056;4.83e-07;2 | |||
|ontology_enrichment_disease=DOID:1749!1.84e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!5.68e-20!72;UBERON:0007196!1.08e-19!14;UBERON:0001558!1.08e-19!14;UBERON:0003102!4.46e-16!95;UBERON:0003126!1.24e-15!7;UBERON:0001005!1.24e-15!7;UBERON:0000166!1.63e-15!21;UBERON:0004815!3.10e-15!3;UBERON:0002031!3.10e-15!3;UBERON:0000165!7.15e-14!28;UBERON:0000930!7.15e-14!28;UBERON:0000161!3.12e-13!35;UBERON:0004119!1.06e-11!169;UBERON:0000925!1.06e-11!169;UBERON:0006595!1.06e-11!169;UBERON:0001003!1.37e-11!14;UBERON:0007376!1.37e-11!14;UBERON:0007383!1.37e-11!14;UBERON:0005178!1.41e-11!34;UBERON:0002224!1.41e-11!34;UBERON:0002185!1.54e-11!4;UBERON:0000065!1.73e-11!53;UBERON:0001911!2.59e-11!4;UBERON:0005333!2.59e-11!4;UBERON:0008425!2.59e-11!4;UBERON:0005311!2.59e-11!4;UBERON:0005181!3.42e-11!35;UBERON:0001444!7.18e-11!48;UBERON:0002419!1.00e-10!2;UBERON:0007771!1.00e-10!2;UBERON:0003297!1.00e-10!2;UBERON:0001821!1.00e-10!2;UBERON:0003487!1.00e-10!2;UBERON:0001820!1.00e-10!2;UBERON:0005089!1.00e-10!2;UBERON:0005088!1.00e-10!2;UBERON:0001007!7.65e-10!155;UBERON:0001555!7.65e-10!155;UBERON:0007026!7.65e-10!155;UBERON:0003127!1.77e-09!2;UBERON:0003729!2.44e-08!5;UBERON:0002365!2.54e-08!31;UBERON:0002330!2.54e-08!31;UBERON:0001041!3.72e-08!98;UBERON:0000072!5.13e-08!46;UBERON:0005157!2.18e-07!51;UBERON:0001044!3.69e-07!6;UBERON:0003293!3.69e-07!6;UBERON:0003294!3.69e-07!6;UBERON:0010047!3.69e-07!6;UBERON:0000167!3.69e-07!6;UBERON:0000077!3.75e-07!130;UBERON:0004921!3.75e-07!129;UBERON:0004185!3.75e-07!129;UBERON:0005085!4.13e-07!29;UBERON:0005153!5.86e-07!37;UBERON:0000915!6.29e-07!52;UBERON:0001949!6.55e-07!3;UBERON:0004121!7.74e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.25e-34;3!UBERON:0002031;3.25e-34;3!UBERON:0002419;1.78e-23;2!UBERON:0007771;1.78e-23;2!UBERON:0003297;1.78e-23;2!UBERON:0001821;1.78e-23;2!UBERON:0003487;1.78e-23;2!UBERON:0001820;1.78e-23;2!UBERON:0002185;8.07e-21;5!UBERON:0001003;2.10e-18;15!UBERON:0007376;2.10e-18;15!UBERON:0000485;4.69e-15;7!UBERON:0005795;2.20e-12;1!UBERON:0007196;3.18e-12;15!UBERON:0001558;3.18e-12;15!UBERON:0001911;3.55e-12;4!UBERON:0010371;1.47e-08;31!UBERON:0005178;4.63e-08;34!UBERON:0002224;4.63e-08;34!UBERON:0005181;5.49e-08;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,3.07e-34,3;UBERON:0002031,3.07e-34,3;UBERON:0002419,1.99e-23,2;UBERON:0007771,1.99e-23,2;UBERON:0003297,1.99e-23,2;UBERON:0001821,1.99e-23,2;UBERON:0003487,1.99e-23,2;UBERON:0001820,1.99e-23,2;UBERON:0005089,1.99e-23,2;UBERON:0005088,1.99e-23,2;UBERON:0002185,7.81e-21,5;UBERON:0001003,2.52e-18,15;UBERON:0007376,2.52e-18,15;UBERON:0007383,2.52e-18,15;UBERON:0005157,2.93e-14,47;UBERON:0005153,4.45e-14,37;UBERON:0007196,3.23e-12,15;UBERON:0001558,3.23e-12,15;UBERON:0001911,3.27e-12,4;UBERON:0005333,3.27e-12,4;UBERON:0008425,3.27e-12,4;UBERON:0005311,3.27e-12,4;UBERON:0000485,7.57e-12,9;UBERON:0003102,8.17e-10,99;UBERON:0005085,5.47e-09,31;UBERON:0005178,4.07e-08,34;UBERON:0002224,4.07e-08,34;UBERON:0005181,7.01e-08,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.27479102031034,3.31326510656075,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,4.44941331341315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.1582634142054,1.1240175325762,1.10581869652794,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41775097242386,0.716468181622786,2.61570544662566,8.43441894163465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,1.28913384510255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29706215198469,11.0510241826209,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,3.26672954583968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.872901148395775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0.691259661814092,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0149704032602,0,0.0673520530145875,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,2.44137706989443,0,0,0 | |||
|short_description=p@chr12:52844247..52844256,- | |||
}} |
Revision as of 13:34, 11 January 2014
Short description: | p@chr12:52844247..52844256, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:52844247..52844256, - |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 6.97e-38 | 14 |
bronchial epithelial cell | 3.07e-34 | 3 |
epidermal cell | 1.65e-30 | 9 |
sebum secreting cell | 1.99e-23 | 2 |
epithelial cell of sweat gland | 1.99e-23 | 2 |
epithelial cell of skin gland | 1.99e-23 | 2 |
acinar cell of sebaceous gland | 1.99e-23 | 2 |
keratinocyte | 3.17e-20 | 5 |
epithelial cell of tracheobronchial tree | 3.54e-20 | 9 |
epithelial cell of lower respiratory tract | 3.54e-20 | 9 |
stratified squamous epithelial cell | 5.76e-17 | 6 |
keratin accumulating cell | 5.76e-17 | 6 |
stratified epithelial cell | 5.76e-17 | 6 |
keratinizing barrier epithelial cell | 5.76e-17 | 6 |
epithelial fate stem cell | 5.76e-17 | 6 |
stratified epithelial stem cell | 5.76e-17 | 6 |
surface ectodermal cell | 5.76e-17 | 6 |
epithelial cell of prostate | 2.21e-15 | 3 |
ecto-epithelial cell | 2.75e-15 | 34 |
respiratory epithelial cell | 4.65e-14 | 13 |
endo-epithelial cell | 2.99e-12 | 42 |
epithelial cell of esophagus | 3.08e-12 | 1 |
mammary gland epithelial cell | 3.27e-12 | 4 |
acinar cell | 5.95e-10 | 5 |
epithelial cell | 5.05e-09 | 253 |
endodermal cell | 1.08e-08 | 58 |
protein secreting cell | 1.94e-08 | 6 |
corneal epithelial cell | 6.07e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 3.07e-34 | 3 |
epithelium of bronchus | 3.07e-34 | 3 |
skin gland | 1.99e-23 | 2 |
epidermis gland | 1.99e-23 | 2 |
gland of integumental system | 1.99e-23 | 2 |
sebaceous gland | 1.99e-23 | 2 |
skin sebaceous gland | 1.99e-23 | 2 |
sweat gland | 1.99e-23 | 2 |
sweat gland placode | 1.99e-23 | 2 |
sebaceous gland placode | 1.99e-23 | 2 |
bronchus | 7.81e-21 | 5 |
skin epidermis | 2.52e-18 | 15 |
outer epithelium | 2.52e-18 | 15 |
enveloping layer of ectoderm | 2.52e-18 | 15 |
epithelial fold | 2.93e-14 | 47 |
epithelial bud | 4.45e-14 | 37 |
tracheobronchial tree | 3.23e-12 | 15 |
lower respiratory tract | 3.23e-12 | 15 |
mammary gland | 3.27e-12 | 4 |
mammary bud | 3.27e-12 | 4 |
mammary ridge | 3.27e-12 | 4 |
mammary placode | 3.27e-12 | 4 |
simple columnar epithelium | 7.57e-12 | 9 |
surface structure | 8.17e-10 | 99 |
ectodermal placode | 5.47e-09 | 31 |
thoracic cavity element | 4.07e-08 | 34 |
thoracic cavity | 4.07e-08 | 34 |
thoracic segment organ | 7.01e-08 | 35 |