FFCP PHASE1:Hg19::chr12:54378923..54378966,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3226 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5122 | |||
|TSSclassifier=strong | |||
|UniProt=Q53XI4,Q9NYD6 | |||
|association_with_transcript=0bp_to_NM_017409,uc001sen.2_5end | |||
|description=CAGE_peak_1_at_HOXC10_5end | |||
|id=chr12:54378923..54378966,+ | |||
|ontology_enrichment_celltype=CL:0000153!3.14e-08!9;CL:0000447!3.14e-08!9;CL:0000035!3.16e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.64e-10;9!CL:0000447;2.64e-10;9!CL:1000507;8.71e-10;10!CL:1000494;8.71e-10;10!CL:0000680;4.18e-08;7!CL:1000497;5.14e-08;17!CL:0002518;5.14e-08;17!CL:0000138;1.91e-07;6!CL:0002570;5.96e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.25e-10,9;CL:0000447,2.25e-10,9;CL:1000507,7.46e-10,10;CL:1000494,7.46e-10,10;CL:1000497,4.81e-08,17;CL:0002518,4.81e-08,17;CL:0000058,1.76e-07,6;CL:0000138,1.76e-07,6;CL:0002570,5.34e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!5.70e-17!143;DOID:14566!6.41e-10!239;DOID:162!1.08e-09!235;DOID:305!9.56e-09!106;DOID:1115!2.42e-07!20 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.98e-13,143 | |||
|ontology_enrichment_uberon=UBERON:0002113!1.79e-09!27;UBERON:0003918!1.79e-09!27;UBERON:0005095!1.79e-09!27;UBERON:0007687!1.79e-09!27;UBERON:0000489!3.89e-09!32;UBERON:0001737!1.79e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.63e-10;16!UBERON:0002036;1.63e-10;16!UBERON:0004905;2.87e-10;8!UBERON:0000982;2.87e-10;8!UBERON:0004770;2.87e-10;8!UBERON:0004211;8.71e-10;10!UBERON:0009773;8.71e-10;10!UBERON:0001231;8.71e-10;10!UBERON:0004810;8.71e-10;10!UBERON:0004765;9.15e-10;26!UBERON:0001737;2.17e-09;9!UBERON:0001557;2.17e-09;9!UBERON:0002113;1.04e-08;24!UBERON:0011143;1.04e-08;24!UBERON:0001013;1.46e-08;14!UBERON:0011135;1.97e-07;5!UBERON:0002216;1.97e-07;5!UBERON:0011134;1.97e-07;5!UBERON:0002209;1.97e-07;5!UBERON:0002213;1.97e-07;5!UBERON:0007844;1.97e-07;5!UBERON:0011138;1.97e-07;5!UBERON:0001130;1.97e-07;5!UBERON:0001066;1.97e-07;5!UBERON:0001468;1.97e-07;5!UBERON:0000489;2.10e-07;29!UBERON:0001474;5.01e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.73e-10,8;UBERON:0000982,2.73e-10,8;UBERON:0004770,2.73e-10,8;UBERON:0004810,7.46e-10,10;UBERON:0001737,2.24e-09,9;UBERON:0002113,1.06e-08,26;UBERON:0003918,1.06e-08,26;UBERON:0011143,1.06e-08,26;UBERON:0005095,1.06e-08,26;UBERON:0007687,1.06e-08,26;UBERON:0001013,1.46e-08,14;UBERON:0003104,3.32e-08,160;UBERON:0009142,3.32e-08,160;UBERON:0000489,1.78e-07,31;UBERON:0011135,2.04e-07,5;UBERON:0002216,2.04e-07,5;UBERON:0011134,2.04e-07,5;UBERON:0002209,2.04e-07,5;UBERON:0002213,2.04e-07,5;UBERON:0005856,2.04e-07,5;UBERON:0005866,2.04e-07,5;UBERON:0005863,2.04e-07,5;UBERON:0007844,2.04e-07,5;UBERON:0011138,2.04e-07,5;UBERON:0001130,2.04e-07,5;UBERON:0001066,2.04e-07,5;UBERON:0001468,2.04e-07,5;UBERON:0006555,3.51e-07,16;UBERON:0004819,3.51e-07,16 | |||
|phase1_expression=1.09007027562334,0.214100523890983,0.140954404095971,7.00513088471913,0,0,10.1319951267324,6.31719873426831,27.9468622173827,0,0,0,0.263766978228454,26.8572985923301,31.8141480698799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.843174571537,12.5334477658972,12.8913401875133,7.95285947051099,12.1658717575659,0,0,0.087834785693126,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,16.8970463576408,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,9.26581819421167,4.46251094846307,4.69431538667581,4.3539750077697,0,0,0,0,0,29.1251635820168,18.6840716872222,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0,3.86460810068444,12.0975956615533,4.38818463827292,12.5693736657946,0,0.0920498986422993,0,0,0.10075209822764,5.4259389539356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0025324037055,8.76640388406129,9.15841913557232,12.1323370005633,7.62578054323422,7.82993043066619,7.9550471814497,6.47530834913642,5.00171304030308,0,0,0,0,0,0,0,0,0.737930631258681,0,0.768251997860379,0,4.72486170334665,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,1.16253575405585,0,0,0,0.207328115540772,0,0,1.58744735730423,4.58386110669933,7.03304683260282,5.13217338068116,0.925447434329912,3.30377363628309,5.43070221998099,0,0,0,4.91232519879556,14.3062578340753,3.381211010224,0.531876233169741,0,9.7738802219614,0,15.985330740966,0,28.7589450857465,19.7577680827385,2.28015329005615,0,4.75171123760058,0,0,0,0,0,0,0,0,8.5582143024431,8.25253448005201,16.6435821265811,5.01370697071708,0,0,0,0,0,0,0,0,0,0,0,0,33.0040112724486,21.0071618845064,13.291986161287,0,0,0,0,0.902838299183157,34.1111256083977,5.17365356462525,4.64957918974806,0.553107505625109,2.43274120510632,0,0,0,0,0,0,0,0.30239029332968,0.248107807818777,0,0.841980283299221,0.128139149255701,2.04682899626681,0,0,2.92998418225046,1.06537035187876,1.64254312027618,0,4.64841513839837,0.362578348774867,0.40101294060657,0,0,0,0,6.76799419361118,4.85196623757813,13.3339460760065,4.38417673959782,10.5551628892876,1.13733384070897,0,0.431831832204279,0,20.5919292533328,29.5996966574364,2.80363900349542,2.49322802678617,10.074363962498,0,0,0,0,0,0.618246069886334,3.66277859273374,3.38288949674411,9.76251414593493,6.50060246036521,0,12.4705226596837,0.462145851343933,0,3.1702411671442,28.1441041554877,20.8824039236489,4.17610474338894,12.9096451687769,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0.539617372749944,0,0,0,0,0,0,0.731140468893853,0,0,0,0,0,0,0,0,0,11.1600707329487,6.196469961995,7.32408566583828,16.4923055034659,13.0671224547451,10.7001315444375,0,8.65541304720423,9.87884678879706,0,0,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,3.73884248946156,0.962479855263359,5.88096518354476,0,0,0,3.34795172730527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75849285861836,0,0,0,0,0,4.11709188898084,6.29985170869144,8.73795756596497,0,4.2620422020962,0,0.296964680832639,0,0,0,0,0.659215496907038,4.64475897881586,1.79323189425963,0.276283915531148,4.03092396566842,0,0,0,0,0,0.511572370226872,0.591860433821602,0,3.33410970433911,0,0,0,0,36.5582799984098,0.724999575434793,0.568967241427498,0,6.38246740773428,6.20538071834636,3.49925536059905,3.12524990879926,0,0,0,0,0,0,4.79329239483557,1.95193241990045,0.307801034015188,0,0,0.718061155278177,2.82483166997221,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,2.59666367690509,0,0.265372693510018,0.611030144933625,0.296521128680622,0.370691816839509,0.522109747527277,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0.30607276163049,0,0.751617097072463,1.14057010536972,0,0.330991955875499,0.941798755221676,1.19472429772959,1.13843818411917,11.0939738410511,0,0.489961987071888,0.261177619741208,4.01871336956669,2.75177651954586,11.0302217669557,16.7374536127365,10.4286630457576,0,10.5024790762885,0,0.822251547880505,1.19228767021794,0,11.1464288158838,0,0,2.39771531498556,7.06043044055119,8.81931790477551,0,0,0.124252535565433,0,0.67952103036807,1.15063130943567,2.65195365854437,0,0,0,0,0,0,0,0,0,2.99518500748487,0,0,0,0,1.16495949527454,0,0,0,5.70879392785543,0,0,0,0,0,0,0.2249738915515,0,0,3.35434687599266,8.27459926641581,13.3759199744245,0,0,2.30298236783334,0,0,0.76280561296425,0.542999601753713,0,0,2.39460383124975,0,0.851940108927109,0.79318464064088,0,0,0,0,0.171086837884329,0,0,0,0,0,0.395223263795889,0,4.46838880439127,2.1760712134779,6.5179372445902,4.59518365145192,6.55745261419609,0,0,0,0,0,0,0,0.138348634936231,0.249960815924213,1.21319294033318,0.856396000634902,0,0,6.37652525887631,2.68658645196373,3.97312626740282,2.77402930751307,12.8794043587061,21.1317037472163,9.7879234375619,0,0,0,0,0,0,0.465788870628778,0,0,0,0.300515217994437,1.52322084867518,0,0,2.14821114084977,0.464033759878494,0.398095888698616,0.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| |||
|short_description=p1@HOXC10 | |||
}} |
Revision as of 13:47, 11 January 2014
Short description: | p1@HOXC10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXC10_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_017409, uc001sen.2_5end |
EntrezGene: | HOXC10 |
HGNC: | 5122 |
UniProt: | Q53XI4Q9NYD6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.25e-10 | 9 |
carbohydrate secreting cell | 2.25e-10 | 9 |
kidney tubule cell | 7.46e-10 | 10 |
nephron tubule epithelial cell | 7.46e-10 | 10 |
kidney cell | 4.81e-08 | 17 |
kidney epithelial cell | 4.81e-08 | 17 |
chondroblast | 1.76e-07 | 6 |
chondrocyte | 1.76e-07 | 6 |
mesenchymal stem cell of adipose | 5.34e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.73e-10 | 8 |
skeletal joint | 2.73e-10 | 8 |
articular system | 2.73e-10 | 8 |
nephron tubule epithelium | 7.46e-10 | 10 |
larynx | 2.24e-09 | 9 |
kidney | 1.06e-08 | 26 |
kidney mesenchyme | 1.06e-08 | 26 |
upper urinary tract | 1.06e-08 | 26 |
kidney rudiment | 1.06e-08 | 26 |
kidney field | 1.06e-08 | 26 |
adipose tissue | 1.46e-08 | 14 |
mesenchyme | 3.32e-08 | 160 |
entire embryonic mesenchyme | 3.32e-08 | 160 |
cavitated compound organ | 1.78e-07 | 31 |
intervertebral cartilage | 2.04e-07 | 5 |
symphysis | 2.04e-07 | 5 |
nonsynovial joint | 2.04e-07 | 5 |
fibrous joint | 2.04e-07 | 5 |
cartilaginous joint | 2.04e-07 | 5 |
developing mesenchymal condensation | 2.04e-07 | 5 |
pre-cartilage condensation | 2.04e-07 | 5 |
cartilaginous condensation | 2.04e-07 | 5 |
cartilage element | 2.04e-07 | 5 |
post-cranial axial skeletal system | 2.04e-07 | 5 |
vertebral column | 2.04e-07 | 5 |
intervertebral disk | 2.04e-07 | 5 |
intervertebral joint | 2.04e-07 | 5 |
excretory tube | 3.51e-07 | 16 |
kidney epithelium | 3.51e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.98e-13 | 143 |