FFCP PHASE1:Hg19::chr12:105889929..105889933,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3225 | |||
|description=CAGE_peak_at_chr12:105889929..105889933,+ | |||
|id=chr12:105889929..105889933,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.26e-43!24;CL:0000115!5.84e-29!35;CL:0002078!8.12e-26!44;CL:0000071!4.00e-24!18;CL:0002546!4.00e-24!18;CL:0005020!7.29e-24!6;CL:0002138!7.29e-24!6;CL:0005022!7.29e-24!6;CL:0002543!8.00e-24!6;CL:0000213!3.54e-19!57;CL:0000215!3.54e-19!57;CL:0002618!6.18e-18!3;CL:1000413!2.98e-10!9;CL:0002544!3.61e-09!6;CL:0000222!1.10e-08!119;CL:0000064!3.54e-08!3;CL:0005012!3.54e-08!3;CL:0000067!3.54e-08!3;CL:0002304!3.54e-08!3;CL:0000076!2.64e-07!62;CL:0000220!6.59e-07!246;CL:0002321!8.17e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002618;2.03e-66;3!CL:0002543;6.50e-34;6!CL:0002138;1.07e-33;6!CL:0002139;1.33e-33;24!CL:0000115;3.38e-17;36!CL:0002078;1.66e-12;45!CL:0000071;4.19e-12;18!CL:0000213;4.40e-10;58!CL:0000215;4.40e-10;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002618,1.71e-66,3;CL:0002543,5.98e-34,6;CL:0005020,1.17e-33,6;CL:0002138,1.17e-33,6;CL:0005022,1.17e-33,6;CL:0002139,1.33e-33,24;CL:0000115,9.32e-23,36;CL:0002078,2.09e-18,45;CL:0000213,1.72e-14,58;CL:0000215,1.72e-14,58;CL:0000071,4.07e-12,18;CL:0002546,4.07e-12,18;CL:0000222,2.26e-07,121 | |||
|ontology_enrichment_development_v019=CL:0005022;1.07e-33;6!CL:0002546;4.19e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!4.00e-24!18;UBERON:0004638!4.00e-24!18;UBERON:0004852!4.00e-24!18;UBERON:0000487!1.88e-19!22;UBERON:0001473!7.58e-18!8;UBERON:0004536!7.58e-18!8;UBERON:0006558!7.58e-18!8;UBERON:0006914!6.26e-17!25;UBERON:0002049!7.13e-17!79;UBERON:0007798!7.13e-17!79;UBERON:0001638!8.22e-16!9;UBERON:0003920!8.22e-16!9;UBERON:0004582!8.22e-16!9;UBERON:0000055!3.08e-15!69;UBERON:0002465!3.14e-14!10;UBERON:0004535!3.62e-14!110;UBERON:0001009!1.11e-13!113;UBERON:0002066!5.85e-11!5;UBERON:0003915!2.98e-10!9;UBERON:0004700!2.98e-10!9;UBERON:0001917!2.98e-10!9;UBERON:0004872!1.77e-08!84;UBERON:0001778!3.54e-08!3;UBERON:0001775!3.54e-08!3;UBERON:0001981!1.39e-07!60;UBERON:0007500!1.39e-07!60;UBERON:0004537!1.39e-07!60;UBERON:0006965!1.39e-07!60;UBERON:0001000!5.26e-07!1;UBERON:0005352!5.26e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002066;2.01e-40;5!UBERON:0001473;1.34e-25;8!UBERON:0004536;1.34e-25;8!UBERON:0006558;1.34e-25;8!UBERON:0001638;4.85e-23;9!UBERON:0010260;4.85e-23;9!UBERON:0003920;4.85e-23;9!UBERON:0004582;4.85e-23;9!UBERON:0002465;9.93e-21;10!UBERON:0004638;4.19e-12;18!UBERON:0001986;4.19e-12;18!UBERON:0004852;4.19e-12;18!UBERON:0000487;4.23e-10;22!UBERON:0006914;5.17e-09;25!UBERON:0002049;1.30e-08;75!UBERON:0007798;1.30e-08;75!UBERON:0002405;2.26e-08;27!UBERON:0000055;8.12e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002066,1.81e-40,5;UBERON:0001473,1.43e-25,8;UBERON:0004536,1.43e-25,8;UBERON:0006558,1.43e-25,8;UBERON:0001638,4.59e-23,9;UBERON:0010260,4.59e-23,9;UBERON:0003920,4.59e-23,9;UBERON:0004582,4.59e-23,9;UBERON:0002465,1.04e-20,10;UBERON:0000055,1.71e-12,68;UBERON:0004638,4.07e-12,18;UBERON:0001986,4.07e-12,18;UBERON:0004852,4.07e-12,18;UBERON:0002049,5.31e-11,78;UBERON:0007798,5.31e-11,78;UBERON:0000487,4.14e-10,22;UBERON:0006914,5.06e-09,25;UBERON:0004535,4.22e-08,109;UBERON:0001009,6.64e-08,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0,0,0,0,0,0,0.238490624305342,0,0,0.39752481473341,0,0.694281003215189,0,0,0,0.208994966536811,2.58416759169329,1.06729878806013,0.66944122552934,0,0,0,0,0.81014194788176,3.39338967479503,2.91888184414021,0.225222960966644,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:105889929..105889933,+ | |||
}} |
Revision as of 15:39, 11 January 2014
Short description: | p@chr12:105889929..105889933, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:105889929..105889933, + |
Coexpression cluster: | C3225_Endothelial_Neural_Lymphatic_Aortic_aorta_Whole_ductus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 1.71e-66 | 3 |
vein endothelial cell | 5.98e-34 | 6 |
lymphangioblast | 1.17e-33 | 6 |
endothelial cell of lymphatic vessel | 1.17e-33 | 6 |
vascular lymphangioblast | 1.17e-33 | 6 |
endothelial cell of vascular tree | 1.33e-33 | 24 |
endothelial cell | 9.32e-23 | 36 |
meso-epithelial cell | 2.09e-18 | 45 |
lining cell | 1.72e-14 | 58 |
barrier cell | 1.72e-14 | 58 |
blood vessel endothelial cell | 4.07e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.07e-12 | 18 |
mesodermal cell | 2.26e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
umbilical vein | 1.81e-40 | 5 |
lymphatic vessel | 1.43e-25 | 8 |
lymph vasculature | 1.43e-25 | 8 |
lymphatic part of lymphoid system | 1.43e-25 | 8 |
vein | 4.59e-23 | 9 |
umbilical blood vessel | 4.59e-23 | 9 |
venous blood vessel | 4.59e-23 | 9 |
venous system | 4.59e-23 | 9 |
lymphoid system | 1.04e-20 | 10 |
vessel | 1.71e-12 | 68 |
blood vessel endothelium | 4.07e-12 | 18 |
endothelium | 4.07e-12 | 18 |
cardiovascular system endothelium | 4.07e-12 | 18 |
vasculature | 5.31e-11 | 78 |
vascular system | 5.31e-11 | 78 |
simple squamous epithelium | 4.14e-10 | 22 |
squamous epithelium | 5.06e-09 | 25 |
cardiovascular system | 4.22e-08 | 109 |
circulatory system | 6.64e-08 | 112 |