FFCP PHASE1:Hg19::chr12:114843852..114843867,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6910 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11604 | |||
|TSSclassifier=strong | |||
|UniProt=Q99593 | |||
|association_with_transcript=21bp_to_ENST00000405440,NM_181486,uc001tvo.2_5end | |||
|coexpression_cluster_id=C131 | |||
|description=CAGE_peak_3_at_TBX5_5end | |||
|id=chr12:114843852..114843867,- | |||
|ontology_enrichment_celltype=CL:0002620!1.08e-18!23;CL:0000057!2.19e-11!75;CL:0002334!7.92e-09!12;CL:0000136!5.40e-07!15;CL:0002580!7.44e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.78e-23;23!CL:0002600;1.80e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.41e-23,23;CL:0002600,2.30e-10,2;CL:0000057,5.48e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.62e-10!5;DOID:450!1.62e-10!5;DOID:66!1.62e-10!5;DOID:423!1.62e-10!5;DOID:0080000!1.62e-10!5;DOID:11722!1.62e-10!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.21e-15;5!DOID:450;1.21e-15;5!DOID:66;1.21e-15;5!DOID:423;1.21e-15;5!DOID:0080000;1.21e-15;5!DOID:11722;1.21e-15;5!DOID:114;2.33e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.68e-15,5;DOID:450,1.68e-15,5;DOID:66,1.68e-15,5;DOID:423,1.68e-15,5;DOID:0080000,1.68e-15,5;DOID:11722,1.68e-15,5;DOID:114,2.34e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0007100!1.31e-15!27;UBERON:0003103!2.38e-11!69;UBERON:0000948!3.36e-11!24;UBERON:0005498!3.36e-11!24;UBERON:0004140!3.36e-11!24;UBERON:0009881!3.36e-11!24;UBERON:0004141!3.36e-11!24;UBERON:0003084!3.36e-11!24;UBERON:0007005!3.36e-11!24;UBERON:0004139!3.36e-11!24;UBERON:0004291!3.36e-11!24;UBERON:0002199!6.56e-11!45;UBERON:0002416!6.56e-11!45;UBERON:0002097!3.61e-10!40;UBERON:0000915!4.96e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;5.29e-12;25!UBERON:0002097;1.07e-08;41!UBERON:0003978;5.82e-08;3!UBERON:0000946;5.82e-08;3!UBERON:0002199;5.89e-08;46!UBERON:0002416;5.89e-08;46!UBERON:0004151;9.17e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.73e-14,27;UBERON:0002097,5.68e-12,41;UBERON:0002199,1.91e-10,46;UBERON:0002416,1.91e-10,46;UBERON:0003103,1.16e-09,68;UBERON:0003978,6.03e-08,3;UBERON:0009751,6.03e-08,3;UBERON:0000946,6.03e-08,3;UBERON:0002523,6.03e-08,3;UBERON:0005983,6.03e-08,3;UBERON:0002165,6.03e-08,3;UBERON:0002062,6.03e-08,3;UBERON:0007280,6.03e-08,3;UBERON:0004151,9.34e-08,3;UBERON:0000948,4.39e-07,24;UBERON:0005498,4.39e-07,24;UBERON:0004140,4.39e-07,24;UBERON:0009881,4.39e-07,24;UBERON:0004141,4.39e-07,24;UBERON:0003084,4.39e-07,24;UBERON:0007005,4.39e-07,24;UBERON:0004139,4.39e-07,24;UBERON:0004291,4.39e-07,24 | |||
|phase1_expression=1.81678379270557,0.428201047781966,0,0,0,0,0,0,0,0.982935746006035,0,0,0,0,0,0,0.602694528023977,0.730310090387373,1.46379839637152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0.144846518960824,0,0,0,0.221729397462564,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0.311211035399766,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0.23486899728753,0,0.280901613404497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15267562826634,1.06778694409284,1.48352330811693,1.20036438433761,0.515262646192195,0,0.37223371266318,1.0126579934476,1.07180705677318,2.27190396819703,1.38074847963449,0,2.4850671476163,1.10827308050404,2.03472710772585,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,3.12781012085098,0.195801157462741,0,0,0,0,0,0,0,0.744323423456331,1.68808170616869,0.841980283299221,0,2.04682899626681,0,0,0.462629081407967,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64865618636356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767693373934002,0.42793898803392,0,0,0,0,0,0,0,0,0.975267478179181,0,0,0,0,1.13008116620243,0,0,0,1.15755106853338,1.31178950409327,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0,0,0,0,2.2594512186427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.479651084554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71986032471617,0,0,0,0.969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.54062483435086,3.20824593616357,0,2.1964690054889,6.43839072204856,2.90122894674434,7.72609933597352,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,3.97255182219259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73755943986931,20.1221510527572,1.24271716604159,0,0,0,0,0.544017803369474,0.5013797880454,0.306345576763462,1.31149052283922,0.157054096250234,0,0,0,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0.149254802886874,0,0.554805861502613,0,0,0,0,0.756154618816195,0.15543720058278,0.443565449968902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,4.31299245586727,0,0,0.33946505990805,5.95209776284712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2557596390157,0,0,0,0,0,1.33053555243958,0,0,0,0,0,0,0.863424021355654,0,0,0,0,0.47775168788705,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0.198950775161368,0,0,0,0.150962843566674,0,0,0,0.490296643507811,0,0,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0,0,0.103432995861895,0,0.952257725854961,0,0,0,0.12729431655633,0.808468755832877,0,0,0,0.502055437748735,1.66330178273007,0,0,0,0,4.69281884806909,0,0,0.665756774185513,0.201273793591026,0 | |||
|short_description=p3@TBX5 | |||
}} |
Revision as of 16:04, 11 January 2014
Short description: | p3@TBX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TBX5_5end |
Coexpression cluster: | C131_lung_trachea_Alveolar_thyroid_umbilical_throat_skin |
Association with transcript: | 21bp_to_ENST00000405440, NM_181486, uc001tvo.2_5end |
EntrezGene: | TBX5 |
HGNC: | 11604 |
UniProt: | Q99593 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.41e-23 | 23 |
smooth muscle cell of trachea | 2.30e-10 | 2 |
fibroblast | 5.48e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 8.73e-14 | 27 |
skin of body | 5.68e-12 | 41 |
integument | 1.91e-10 | 46 |
integumental system | 1.91e-10 | 46 |
compound organ | 1.16e-09 | 68 |
valve | 6.03e-08 | 3 |
cardiac mesenchyme | 6.03e-08 | 3 |
cardial valve | 6.03e-08 | 3 |
tunica intima | 6.03e-08 | 3 |
heart layer | 6.03e-08 | 3 |
endocardium | 6.03e-08 | 3 |
endocardial cushion | 6.03e-08 | 3 |
presumptive endocardium | 6.03e-08 | 3 |
cardiac chamber | 9.34e-08 | 3 |
heart | 4.39e-07 | 24 |
primitive heart tube | 4.39e-07 | 24 |
primary heart field | 4.39e-07 | 24 |
anterior lateral plate mesoderm | 4.39e-07 | 24 |
heart tube | 4.39e-07 | 24 |
heart primordium | 4.39e-07 | 24 |
cardiac mesoderm | 4.39e-07 | 24 |
cardiogenic plate | 4.39e-07 | 24 |
heart rudiment | 4.39e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.68e-15 | 5 |
myotonic disease | 1.68e-15 | 5 |
muscle tissue disease | 1.68e-15 | 5 |
myopathy | 1.68e-15 | 5 |
muscular disease | 1.68e-15 | 5 |
myotonic dystrophy | 1.68e-15 | 5 |
heart disease | 2.34e-11 | 2 |