FFCP PHASE1:Hg19::chr16:2034635..2034644,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2671 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4236 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-67bp_to_uc002coc.2_5end | |||
|coexpression_cluster_id=C190 | |||
|description=CAGE_peak_12_at_GFER_5end | |||
|id=chr16:2034635..2034644,+ | |||
|ontology_enrichment_celltype=CL:0002231!5.15e-11!3;CL:0002563!1.99e-08!4;CL:0002322!8.92e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002231;2.59e-12;3!CL:0000182;5.37e-12;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002231,2.31e-12,3;CL:0000182,6.00e-12,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.42e-13;11!UBERON:0009497;3.75e-11;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.34e-12!27;UBERON:0005409!1.29e-09!35;UBERON:0001242!1.99e-08!4;UBERON:0001262!1.99e-08!4;UBERON:0004786!1.99e-08!4;UBERON:0004808!1.99e-08!4;UBERON:0001277!1.99e-08!4;UBERON:0001155!3.32e-08!9;UBERON:0003929!7.50e-08!54;UBERON:0004921!1.75e-07!129;UBERON:0004185!1.75e-07!129;UBERON:0003350!6.65e-07!5;UBERON:0000059!8.62e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;3.11e-27;4!UBERON:0000160;2.79e-17;17!UBERON:0005409;1.05e-13;22!UBERON:0004921;1.26e-09;33!UBERON:0002107;6.15e-08;19!UBERON:0006925;6.15e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,2.72e-27,4;UBERON:0000160,2.64e-17,17;UBERON:0005409,3.13e-12,25;UBERON:0004921,2.09e-10,118;UBERON:0001007,1.51e-08,145;UBERON:0001555,1.51e-08,145;UBERON:0007026,1.51e-08,145;UBERON:0002107,6.59e-08,19;UBERON:0006925,6.59e-08,19;UBERON:0008836,6.59e-08,19;UBERON:0004119,8.84e-08,160;UBERON:0000925,8.84e-08,160;UBERON:0006595,8.84e-08,160;UBERON:0008835,5.91e-07,22;UBERON:0003894,5.91e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32945394550784,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0.530745387020035,3.05515072466813,0,0,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02418136999391,0.494495150286999,1.21326378937533,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,1.62065732026684,1.09279780251979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@GFER | |||
}} |
Revision as of 01:50, 12 January 2014
Short description: | p12@GFER |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_GFER_5end |
Coexpression cluster: | C190_colon_small_rectum_duodenum_appendix_temporal_oral |
Association with transcript: | -67bp_to_uc002coc.2_5end |
EntrezGene: | GFER |
HGNC: | 4236 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of prostate | 2.31e-12 | 3 |
hepatocyte | 6.00e-12 | 12 |
Ontology term | p-value | n |
---|---|---|
small intestine | 2.72e-27 | 4 |
intestine | 2.64e-17 | 17 |
gastrointestinal system | 3.13e-12 | 25 |
subdivision of digestive tract | 2.09e-10 | 118 |
digestive system | 1.51e-08 | 145 |
digestive tract | 1.51e-08 | 145 |
primitive gut | 1.51e-08 | 145 |
liver | 6.59e-08 | 19 |
digestive gland | 6.59e-08 | 19 |
liver bud | 6.59e-08 | 19 |
endoderm-derived structure | 8.84e-08 | 160 |
endoderm | 8.84e-08 | 160 |
presumptive endoderm | 8.84e-08 | 160 |
hepatic diverticulum | 5.91e-07 | 22 |
liver primordium | 5.91e-07 | 22 |