FFCP PHASE1:Hg19::chr17:53343577..53343588,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_at_chr17:53343577..53343588,+ | |||
|id=chr17:53343577..53343588,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;8.61e-38;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,8.61e-38,12;CL:0000223,1.35e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.07e-41;11!UBERON:0009497;5.63e-35;13!UBERON:0001041;9.12e-16;30!UBERON:0003104;5.86e-15;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:7;7.43e-13;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,2.38e-12,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.83e-47!115;UBERON:0002780!9.97e-28!41;UBERON:0001890!9.97e-28!41;UBERON:0006240!9.97e-28!41;UBERON:0003080!5.71e-27!42;UBERON:0001869!1.00e-25!32;UBERON:0001893!5.00e-24!34;UBERON:0002791!1.20e-21!33;UBERON:0002020!6.35e-21!34;UBERON:0003528!6.35e-21!34;UBERON:0001049!6.58e-21!57;UBERON:0005068!6.58e-21!57;UBERON:0006241!6.58e-21!57;UBERON:0007135!6.58e-21!57;UBERON:0002616!4.82e-20!59;UBERON:0000955!4.93e-20!69;UBERON:0006238!4.93e-20!69;UBERON:0003056!2.41e-19!61;UBERON:0005743!1.36e-18!86;UBERON:0001017!6.70e-18!82;UBERON:0002619!7.14e-18!22;UBERON:0003075!4.19e-17!86;UBERON:0007284!4.19e-17!86;UBERON:0001950!1.85e-16!20;UBERON:0000073!2.60e-16!94;UBERON:0001016!2.60e-16!94;UBERON:0002346!4.22e-16!90;UBERON:0000200!7.03e-16!6;UBERON:0000956!1.56e-15!25;UBERON:0000203!1.56e-15!25;UBERON:0000153!6.50e-13!129;UBERON:0007811!6.50e-13!129;UBERON:0000033!1.40e-12!123;UBERON:0002771!3.76e-12!3;UBERON:0001871!6.13e-12!7;UBERON:0002420!1.92e-10!9;UBERON:0007245!1.92e-10!9;UBERON:0010009!1.92e-10!9;UBERON:0010011!1.92e-10!9;UBERON:0000454!1.92e-10!9;UBERON:0004121!2.55e-09!169;UBERON:0001829!5.51e-09!2;UBERON:0000924!5.75e-09!173;UBERON:0006601!5.75e-09!173;UBERON:0009663!8.26e-09!7;UBERON:0001875!1.28e-08!2;UBERON:0006514!1.28e-08!2;UBERON:0000477!2.59e-08!286;UBERON:0000025!2.83e-08!194;UBERON:0004111!3.72e-08!241;UBERON:0000349!3.12e-07!5;UBERON:0000475!4.37e-07!365;UBERON:0002308!7.47e-07!9;UBERON:0000125!7.47e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001875;9.18e-26;2!UBERON:0006514;9.18e-26;2!UBERON:0002107;2.73e-24;19!UBERON:0006925;2.73e-24;19!UBERON:0002423;1.02e-18;25!UBERON:0002365;3.81e-14;31!UBERON:0002330;3.81e-14;31!UBERON:0002368;2.45e-13;33!UBERON:0000949;2.01e-10;43!UBERON:0009663;2.35e-08;7!UBERON:0002420;8.85e-07;9!UBERON:0000125;8.85e-07;9!UBERON:0007245;8.85e-07;9!UBERON:0002308;8.85e-07;9!UBERON:0010009;8.85e-07;9!UBERON:0010011;8.85e-07;9!UBERON:0000454;8.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001875,9.18e-26,2;UBERON:0006514,9.18e-26,2;UBERON:0002107,2.73e-24,19;UBERON:0006925,2.73e-24,19;UBERON:0008836,2.73e-24,19;UBERON:0008835,3.99e-21,22;UBERON:0003894,3.99e-21,22;UBERON:0009854,2.97e-20,23;UBERON:0007499,1.02e-18,25;UBERON:0009497,1.02e-18,25;UBERON:0000015,1.02e-18,25;UBERON:0002423,1.02e-18,25;UBERON:0006235,1.02e-18,25;UBERON:0004161,1.02e-18,25;UBERON:0009856,4.90e-18,26;UBERON:0002365,2.73e-15,31;UBERON:0002330,2.73e-15,31;UBERON:0002368,1.18e-13,35;UBERON:0000949,7.94e-11,45;UBERON:0003929,3.61e-09,54;UBERON:0005172,3.61e-09,54;UBERON:0005173,3.61e-09,54;UBERON:0002530,1.83e-08,59;UBERON:0009663,2.35e-08,7;UBERON:0002417,2.45e-08,60;UBERON:0000916,2.45e-08,60;UBERON:0002420,8.85e-07,9;UBERON:0000125,8.85e-07,9;UBERON:0007245,8.85e-07,9;UBERON:0002308,8.85e-07,9;UBERON:0010009,8.85e-07,9;UBERON:0010011,8.85e-07,9;UBERON:0000454,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0.87754158861589,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0.225980740780532,0,0,0.569797163602908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,4.88455730304787,4.69770392772649,3.84200199968854,0,0,0,0.136203406111576,0,0,0,0,0,0.485996453264197,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0.983617892129413,0,0,0.488105059607853,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.405225507710368,0,0,0.443910671357348,0,0.548257766857182,0,0,0,0,0,0,0.227662191351298,0,0,0,0.135939465953663,0.328863867814245,0,0,0.078493092850514,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0.458729283404541,0,0.157771562193185,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0.213233981900981,0,0,0,0,0.25458863311266,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:53343577..53343588,+ | |||
}} |
Revision as of 16:22, 20 January 2014
Short description: | p@chr17:53343577..53343588, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:53343577..53343588, + |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 8.61e-38 | 12 |
endodermal cell | 1.35e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
globus pallidus | 9.18e-26 | 2 |
pallidum | 9.18e-26 | 2 |
liver | 2.73e-24 | 19 |
digestive gland | 2.73e-24 | 19 |
liver bud | 2.73e-24 | 19 |
hepatic diverticulum | 3.99e-21 | 22 |
liver primordium | 3.99e-21 | 22 |
digestive tract diverticulum | 2.97e-20 | 23 |
epithelial sac | 1.02e-18 | 25 |
epithelium of foregut-midgut junction | 1.02e-18 | 25 |
anatomical boundary | 1.02e-18 | 25 |
hepatobiliary system | 1.02e-18 | 25 |
foregut-midgut junction | 1.02e-18 | 25 |
septum transversum | 1.02e-18 | 25 |
sac | 4.90e-18 | 26 |
exocrine gland | 2.73e-15 | 31 |
exocrine system | 2.73e-15 | 31 |
endocrine gland | 1.18e-13 | 35 |
endocrine system | 7.94e-11 | 45 |
gut epithelium | 3.61e-09 | 54 |
abdomen element | 3.61e-09 | 54 |
abdominal segment element | 3.61e-09 | 54 |
gland | 1.83e-08 | 59 |
telencephalic nucleus | 2.35e-08 | 7 |
abdominal segment of trunk | 2.45e-08 | 60 |
abdomen | 2.45e-08 | 60 |
basal ganglion | 8.85e-07 | 9 |
neural nucleus | 8.85e-07 | 9 |
nuclear complex of neuraxis | 8.85e-07 | 9 |
nucleus of brain | 8.85e-07 | 9 |
aggregate regional part of brain | 8.85e-07 | 9 |
collection of basal ganglia | 8.85e-07 | 9 |
cerebral subcortex | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.38e-12 | 39 |