FFCP PHASE1:Hg19::chr19:4279244..4279280,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56961 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |||
|TSSclassifier=not | |||
|UniProt=Q96IW2 | |||
|association_with_transcript=-378bp_to_AK055673_5end | |||
|coexpression_cluster_id=C1241 | |||
|description=CAGE_peak_1_at_SHD_5end | |||
|id=chr19:4279244..4279280,+ | |||
|ontology_enrichment_celltype=CL:0000188!6.29e-12!9;CL:0002322!3.60e-08!5;CL:0000540!9.85e-07!6;CL:0000031!9.85e-07!6;CL:0000404!9.85e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000188;2.41e-21;9!CL:0000333;2.31e-13;5!CL:0000784;2.73e-13;3!CL:0002321;7.14e-12;15!CL:0000123;6.08e-09;2!CL:0000242;6.08e-09;2!CL:0002322;3.64e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,2.24e-21,9;CL:0000784,2.74e-13,3;CL:0000242,4.42e-09,2;CL:0002322,4.16e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;3.82e-11;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,3.68e-11,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.54e-27!94;UBERON:0001016!2.54e-27!94;UBERON:0001017!3.37e-24!82;UBERON:0005743!1.27e-23!86;UBERON:0001049!3.57e-22!57;UBERON:0005068!3.57e-22!57;UBERON:0006241!3.57e-22!57;UBERON:0007135!3.57e-22!57;UBERON:0002616!1.91e-19!59;UBERON:0000955!8.82e-19!69;UBERON:0006238!8.82e-19!69;UBERON:0002780!1.69e-17!41;UBERON:0001890!1.69e-17!41;UBERON:0006240!1.69e-17!41;UBERON:0003080!6.53e-17!42;UBERON:0003075!2.23e-16!86;UBERON:0007284!2.23e-16!86;UBERON:0004121!1.32e-15!169;UBERON:0001893!2.45e-15!34;UBERON:0007023!2.93e-15!115;UBERON:0002346!3.70e-15!90;UBERON:0002020!3.78e-15!34;UBERON:0003528!3.78e-15!34;UBERON:0001869!5.79e-15!32;UBERON:0000924!7.00e-15!173;UBERON:0006601!7.00e-15!173;UBERON:0002791!2.55e-14!33;UBERON:0002619!6.41e-14!22;UBERON:0001950!8.60e-14!20;UBERON:0000956!2.34e-13!25;UBERON:0000203!2.34e-13!25;UBERON:0003056!2.24e-12!61;UBERON:0000153!1.07e-11!129;UBERON:0007811!1.07e-11!129;UBERON:0000033!1.27e-10!123;UBERON:0000200!2.29e-09!6;UBERON:0001872!2.48e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;7.25e-19;16!UBERON:0002036;7.25e-19;16!UBERON:0000013;2.31e-13;5!UBERON:0002410;2.31e-13;5!UBERON:0000010;5.77e-11;8!UBERON:0002385;1.10e-08;31!UBERON:0001015;1.10e-08;31!UBERON:0000383;1.10e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.20e-13,5;UBERON:0002410,2.20e-13,5;UBERON:0000010,5.37e-11,8;UBERON:0001016,5.70e-08,89 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.626909442956176,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,3.16060901730092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,29.0958561652517,16.0158575018436,10.4008100372278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09776335516636,0.530119073285941,1.04574548582567,0.518305275076852,1.7662459561294,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.3504355692771,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.868687840005475,0.410952645100767,0.716243852959582,0,0,0,0,0,0,0.773288812777695,1.50764638800914,0.637938751653163,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,38.088920043005,0.413536052245775,0.215714200818617,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,36.6382022327142,2.31072925671967,4.91211759123615,9.51072350143261,0.214840489736547,1.59518363305651,7.15903670295248,34.7224939022276,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.66300755196948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0.969332746095218,1.20598527610407,0,0,0,0,0,0,0,3.79217710565611,0.291604613383254,0.868124974666461,0,0.120596438625408,0,0.221158519862449,1.18219047581419,0.658156191461918,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606610196826093,1.60515529459758,0.702793337176017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0.759729551470544,0.391102765469606,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0.136905378891993,1.27746588066972,0,0,3.0721064139948,0,0,0.199679000498991,0,0.669514372325618,2.41860500952215,0,0,0,0,0,0,0,0,0.272406812223151,0,0.825236619583403,0.83088067605837,0,0,0.364497339948148,0,0,0.157363764404994,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,2.65820453990096,0.244052529803926,0.751145584238999,0,0,0.372578417648301,0,0,0,0,0,32.3151085006748,1.7390523433299,0,0,0,0.378806010550178,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.4016936444524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24432592536558,0,0,0,0,0,0,0,0,0,0,0,0,0,21.3583600077098,45.070771163813,1.41539347670307,9.82886743728125,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,1.02558182120378,0,2.21303207885497,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0.781078098613847,0.620060389503552,0.951237152908602,2.7348740450911,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.475788130837822,0.855046056317038,0,0,0,0,0,0,0,0,0.0714765441766563,1.26410889386181,2.55731135809876,0.521574816907738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,18.5570309014112,1.45713297917742,0,34.020582552594,0,0,0.439762066981716,0,0,0.218559560503957,0,0,0,0.392616934229891,0,2.113278637917,0,0,0.0644578879735772,0,0,0,0,0,0,0,0.473314686579554,1.22384682343646,1.30905207102113,0,0,0,0.432626562123789,0,0,22.1722376770015,0,0,0,0.250707539292375,0,0,1.65833887891756,0.413731983447581,0,3.57096647195611,0.0645889098360061,0.0620747142958579,0,0,0.202117188958219,0.217716747896961,2.39563310759697,0.0673520530145875,0,2.66128285236811,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@SHD | |||
}} |
Revision as of 20:39, 20 January 2014
Short description: | p1@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHD_5end |
Coexpression cluster: | C1241_neuroblastoma_small_Skeletal_Dendritic_Pericytes_merkel_mesenchymal |
Association with transcript: | -378bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 2.24e-21 | 9 |
plasmacytoid dendritic cell | 2.74e-13 | 3 |
Merkel cell | 4.42e-09 | 2 |
embryonic stem cell | 4.16e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.20e-13 | 5 |
autonomic nervous system | 2.20e-13 | 5 |
peripheral nervous system | 5.37e-11 | 8 |
nervous system | 5.70e-08 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 3.68e-11 | 6 |