FFCP PHASE1:Hg19::chr2:71127699..71127744,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25806 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12661 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UIW0,F1T0K5 | |||
|association_with_transcript=0bp_to_ENST00000234392,NM_012476,uc002shh.2_5end | |||
|description=CAGE_peak_1_at_VAX2_5end | |||
|id=chr2:71127699..71127744,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.13e-27!180;CL:0000057!6.30e-12!75;CL:0000333!1.63e-09!41;CL:0000680!1.53e-07!57;CL:0000056!1.53e-07!57;CL:0000355!1.53e-07!57;CL:0002620!2.91e-07!23;CL:0000133!3.14e-07!59;CL:0000183!7.66e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.13e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.37e-12,76;CL:0000333,2.40e-10,41;CL:0002620,1.11e-07,23;CL:0000680,1.42e-07,58;CL:0000056,1.42e-07,58;CL:0000355,1.42e-07,58;CL:0000133,4.31e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.99e-10!143;DOID:171!6.78e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:171;1.37e-08;10!DOID:1115;7.30e-07;20 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.09e-10,143;DOID:171,1.38e-08,10;DOID:1115,6.63e-07,20 | |||
|ontology_enrichment_uberon=UBERON:0000475!3.58e-15!365;UBERON:0000468!2.01e-08!659;UBERON:0001134!4.02e-07!61;UBERON:0002036!4.02e-07!61;UBERON:0003082!4.02e-07!61;UBERON:0004290!4.15e-07!70;UBERON:0000119!7.18e-07!312;UBERON:0002385!9.22e-07!63;UBERON:0001015!9.22e-07!63;UBERON:0000383!9.22e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,2.94e-07,71;UBERON:0003059,2.94e-07,71;UBERON:0007282,2.94e-07,71;UBERON:0004290,2.94e-07,71;UBERON:0009618,2.94e-07,71;UBERON:0001134,2.94e-07,62;UBERON:0002036,2.94e-07,62;UBERON:0003082,2.94e-07,62;UBERON:0003077,3.28e-07,72;UBERON:0007285,3.28e-07,72;UBERON:0007524,6.81e-07,73;UBERON:0002199,7.06e-07,46;UBERON:0002416,7.06e-07,46 | |||
|phase1_expression=4.90531624030503,3.63970890614671,4.22863212287913,5.00366491765652,3.12872766099101,3.48935409640147,2.53299878168311,3.15859936713415,5.22371256399677,1.72013755551056,0,0.873765488520689,1.58260186937072,0.618831764800233,0.331397375727916,3.36162573225888,2.41077811209591,3.65155045193687,4.87932798790507,1.23121058076788,3.26401105990805,1.88072832886853,1.71741592278634,2.46373965131192,2.13422487311165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,3.32442660793179,2.1686349143074,3.00802746381534,3.18662341713812,3.9764297352555,2.91980922181582,19.9468464216183,7.9822583086523,12.7360439255033,0.982343066232845,0.728590576585084,0,0.97364218096405,0.870648686496336,0,0,0,0,1.19257444420023,2.58070378531837,2.08284300964557,2.26123176769604,0.419499436209906,4.12677062910101,2.50793959844173,0,0,1.00416183829401,0.402829317109147,0,0.976248230192678,0.735326160691737,4.0507097394088,0,0,0,0,0,0.183201743930407,0,0,0,4.96971951695318,3.29239330327907,5.82600395578163,3.44203944898576,2.12801029319014,3.92474320099615,8.5399196583764,1.72667283892012,4.97937656639626,1.75123873690594,3.75962377160955,2.8757911252537,1.15235184896,2.34321431833797,0.312160076830321,2.85235910772225,1.94283284717341,3.40560046066918,2.91371299862637,3.08991774744947,2.24569588380383,0.245668634623536,3.51307655997603,3.56400857184616,2.96720315134268,6.37112953356618,2.15585442544872,0.168336113954066,0.125118519871964,2.49357703935765,2.63386572528503,1.5324389789951,3.60571341375832,3.06266894532057,8.9694817844431,4.91181994282705,4.02670612203168,6.30191301777245,5.46178404963726,6.44101350114073,5.21127197728451,7.59493495085698,5.06672426838233,6.56327813034698,5.79914361446486,4.84938170456436,3.90510551768276,3.62707553619505,5.93462073086707,0.386521706326594,0.818238361772504,0,0,0,1.2781333715647,1.86589899027667,0,0.36497735907583,0,1.28648187638577,1.38134921352481,6.03678306441573,3.60939740834793,0.709840800239063,0.505754070234305,0.723033089650446,0.330881918197182,0.653638332277218,0,0.269662616320329,0.392442930250692,0.38474715694639,0.738155454624648,2.80483547606892,0.8231480226628,8.82052268313252,0,0,0,0,3.56666471775029,4.63233087806019,0,0,0.201057944823262,0.0925884451585296,2.93227474779292,1.03993478527958,5.77325368101093,20.1718904656634,4.46153038096122,0.288732895522148,0,0.380508304469197,3.1608175918371,14.5942647556128,0,0.234004265139238,0.148631162288728,0,1.17587489739202,0.141775097242386,0,0,0,0,0,0.207328115540772,0.288239906833923,0.12624243342638,7.04826626643076,9.16772221339866,11.7217447210047,11.9750712215894,5.75833959138612,4.20480280981484,2.00078502841405,2.13049060256185,3.05172048183296,1.10007428731425,0.646358578788889,14.3062578340753,3.381211010224,3.19125739901845,1.04007436911366,5.65856223376713,2.83698264046557,6.92697665441858,1.85871391755592,1.08524321078289,2.46972101034231,4.88604276440603,2.48774364119782,0.791951872933429,0.602878754119172,0,0.099972991182057,0,0,0,1.4377491329495,1.14861935834114,4.27910715122155,3.90909528002464,5.75333703141074,8.2368043090352,0,0,0,0,4.06551398755941,2.60279707715243,0,1.50764638800914,0.637938751653163,0,0,0,1.47229790062968,3.00102312635806,2.71265023699736,0.831883446123229,0.892144943985809,0.473107245101804,0,6.62081419400982,2.27407504055985,0,5.31380478828349,4.79359838208428,0.781952530212746,9.79005787313703,8.23544217146054,0,0,0,0.303127571446259,4.99306318531491,0.30239029332968,4.21783273291921,3.52962538562544,2.52594084989766,4.22859192543813,4.09365799253363,2.57366273829772,5.93672265779964,2.00472601943452,4.6166048581413,2.13530605635904,1.03850885836724,2.20799719073923,6.04297247958111,0,0,0.918515585316854,0.546273504020151,3.93373244878272,0.902399225814824,0.462092022626489,2.35304930753057,1.46139224653261,0.844413031143006,0,0.170093705276516,0.647747748306418,0,0.812839312631559,0.501689773854853,0.764628819135115,0,1.56712328305525,0,0,11.5402556302375,7.87235149679294,5.85681110395745,1.13345112812495,13.4607113282965,11.3038014891206,0,0.650060246036521,1.6068392984416,2.12675580242668,2.00263202249038,2.30255512089194,1.24052915236078,1.18162269355101,1.16013355131383,3.49429172406014,6.94449878044551,0.165284915360978,1.15314040419064,1.91419068741876,0.2023155617111,4.18360994367557,7.870308670766,6.2733354314454,1.23213432070436,7.45228442443831,7.82939692867565,4.81842969670192,3.57812216854978,2.60510858551767,6.64396791909324,2.85945290885737,2.81487570442467,3.42351190427136,2.86382923133343,2.35484592059769,1.07923474549989,1.09814811894422,0.471249609382746,8.08729926293264,0,2.94880919367287,3.90106991271672,3.65570234446927,2.11300293513511,4.50449707646353,2.82810863907426,0,8.27048015319186,1.32687795048244,1.75380354101505,0.578775534266688,0.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| |||
|short_description=p1@VAX2 | |||
}} |
Revision as of 03:49, 21 January 2014
Short description: | p1@VAX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VAX2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000234392, NM_012476, uc002shh.2_5end |
EntrezGene: | VAX2 |
HGNC: | 12661 |
UniProt: | Q9UIW0F1T0K5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.37e-12 | 76 |
migratory neural crest cell | 2.40e-10 | 41 |
skin fibroblast | 1.11e-07 | 23 |
muscle precursor cell | 1.42e-07 | 58 |
myoblast | 1.42e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.42e-07 | 58 |
neurectodermal cell | 4.31e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
somite | 2.94e-07 | 71 |
presomitic mesoderm | 2.94e-07 | 71 |
presumptive segmental plate | 2.94e-07 | 71 |
dermomyotome | 2.94e-07 | 71 |
trunk paraxial mesoderm | 2.94e-07 | 71 |
skeletal muscle tissue | 2.94e-07 | 62 |
striated muscle tissue | 2.94e-07 | 62 |
myotome | 2.94e-07 | 62 |
paraxial mesoderm | 3.28e-07 | 72 |
presumptive paraxial mesoderm | 3.28e-07 | 72 |
dense mesenchyme tissue | 6.81e-07 | 73 |
integument | 7.06e-07 | 46 |
integumental system | 7.06e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.09e-10 | 143 |
neuroectodermal tumor | 1.38e-08 | 10 |
sarcoma | 6.63e-07 | 20 |