FFCP PHASE1:Hg19::chr21:45682241..45682265,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29947 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2980 | |||
|TSSclassifier=not | |||
|UniProt=Q9UJW3 | |||
|association_with_transcript=-142bp_to_ENST00000270172,ENST00000418993,NM_013369,NM_175867,uc002zeg.1,uc002zeh.1_5end | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_3_at_DNMT3L_5end | |||
|id=chr21:45682241..45682265,- | |||
|ontology_enrichment_celltype=CL:0000039!1.59e-68!7;CL:0000586!1.59e-68!7;CL:0002322!6.41e-24!5 | |||
|ontology_enrichment_celltype_v019=CL:0000039;3.90e-88;7!CL:0000586;3.90e-88;7!CL:0000083;2.04e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,4.27e-88,7;CL:0000586,4.27e-88,7;CL:0000083,2.04e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.89e-40;10!UBERON:0005564;3.89e-40;10!UBERON:0003056;1.30e-09;3 | |||
|ontology_enrichment_disease=DOID:3095!3.23e-29!22;DOID:2994!3.23e-29!22;DOID:1799!1.23e-14!1;DOID:10165!1.23e-14!1;DOID:1798!1.23e-14!1;DOID:0050687!3.44e-08!143;DOID:305!2.74e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.02e-28;22!DOID:2994;2.02e-28;22!DOID:1799;1.26e-25;1!DOID:10165;1.26e-25;1!DOID:1798;1.26e-25;1!DOID:5409;1.86e-07;4!DOID:1793;2.04e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.08e-28,22;DOID:2994,2.08e-28,22;DOID:1799,1.26e-25,1;DOID:10165,1.26e-25,1;DOID:1798,1.26e-25,1;DOID:305,1.64e-08,106;DOID:0050687,1.74e-08,143;DOID:5409,1.92e-07,4;DOID:1793,2.04e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.33e-27!8;UBERON:0003135!5.28e-20!11;UBERON:0000991!1.29e-10!21;UBERON:0009196!1.29e-10!21;UBERON:0009117!1.29e-10!21;UBERON:0005564!1.29e-10!21;UBERON:0004176!3.82e-10!22;UBERON:0003101!3.82e-10!22;UBERON:0000079!3.82e-10!22;UBERON:0002323!2.66e-07!46;UBERON:0004458!7.58e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.51e-50;8!UBERON:0003135;1.49e-36;11!UBERON:0000991;1.92e-19;21!UBERON:0003101;1.39e-18;22!UBERON:0000079;1.39e-18;22!UBERON:0002323;7.49e-13;45!UBERON:0002553;2.50e-08;52!UBERON:0004458;4.63e-08;48!UBERON:0003133;2.56e-07;44!UBERON:0000922;4.40e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.25e-50,8;UBERON:0003135,1.63e-36,11;UBERON:0000991,2.02e-19,21;UBERON:0009196,2.02e-19,21;UBERON:0009117,2.02e-19,21;UBERON:0005564,2.02e-19,21;UBERON:0004176,1.45e-18,22;UBERON:0003101,1.45e-18,22;UBERON:0000079,1.45e-18,22;UBERON:0002323,9.48e-14,46;UBERON:0004458,6.33e-13,49;UBERON:0003886,9.42e-12,54;UBERON:0002553,1.98e-10,61;UBERON:0003133,9.37e-09,48;UBERON:0005156,3.45e-07,59;UBERON:0000990,3.45e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99733075704478,0.359030577639089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57144016688853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30875085165401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,4.38551967890521,17.1019139369959,33.7254281292881,4.51273570726275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@DNMT3L | |||
}} |
Revision as of 14:09, 21 January 2014
Short description: | p3@DNMT3L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DNMT3L_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | -142bp_to_ENST00000270172, ENST00000418993, NM_013369, NM_175867, uc002zeg.1, uc002zeh.1_5end |
EntrezGene: | DNMT3L |
HGNC: | 2980 |
UniProt: | Q9UJW3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.27e-88 | 7 |
germ cell | 4.27e-88 | 7 |
epithelial cell of pancreas | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 6.25e-50 | 8 |
male reproductive organ | 1.63e-36 | 11 |
gonad | 2.02e-19 | 21 |
indifferent external genitalia | 2.02e-19 | 21 |
indifferent gonad | 2.02e-19 | 21 |
gonad primordium | 2.02e-19 | 21 |
external genitalia | 1.45e-18 | 22 |
male organism | 1.45e-18 | 22 |
male reproductive system | 1.45e-18 | 22 |
body cavity | 9.48e-14 | 46 |
body cavity or lining | 6.33e-13 | 49 |
body cavity precursor | 9.42e-12 | 54 |
anatomical cavity | 1.98e-10 | 61 |
reproductive organ | 9.37e-09 | 48 |
reproductive structure | 3.45e-07 | 59 |
reproductive system | 3.45e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.08e-28 | 22 |
germ cell cancer | 2.08e-28 | 22 |
islet cell tumor | 1.26e-25 | 1 |
endocrine pancreas cancer | 1.26e-25 | 1 |
pancreatic endocrine carcinoma | 1.26e-25 | 1 |
carcinoma | 1.64e-08 | 106 |
cell type cancer | 1.74e-08 | 143 |
lung small cell carcinoma | 1.92e-07 | 4 |
pancreatic cancer | 2.04e-07 | 4 |