FFCP PHASE1:Hg19::chr21:46424452..46424477,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=378825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=19725 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=164bp_to_ENST00000422199,NR_024089,uc002zgo.2_5end | |||
|coexpression_cluster_id=C2636 | |||
|description=CAGE_peak_3_at_LINC00162_5end | |||
|id=chr21:46424452..46424477,- | |||
|ontology_enrichment_celltype=CL:0002150!1.94e-08!3;CL:0000861!1.94e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002327;3.40e-10;4!CL:0000077;1.86e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.88e-12,253;CL:0002327,2.56e-10,4;CL:0000077,1.73e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.61e-14;29 | |||
|ontology_enrichment_disease=DOID:162!2.61e-09!235;DOID:305!6.27e-09!106;DOID:14566!7.06e-09!239;DOID:0050687!1.66e-07!143;DOID:2394!5.15e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.93e-16,235;DOID:14566,1.25e-15,239;DOID:305,6.62e-15,106;DOID:0050687,1.25e-14,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!4.03e-22!9;UBERON:0001557!1.58e-11!19;UBERON:0002075!2.70e-08!18;UBERON:0008947!1.11e-07!38;UBERON:0003258!1.11e-07!38;UBERON:0002323!5.03e-07!46;UBERON:0004732!7.16e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.25e-40;9!UBERON:0001557;4.25e-40;9!UBERON:0001911;3.40e-10;4!UBERON:0000072;3.47e-10;37!UBERON:0000065;3.57e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.75e-40,9;UBERON:0001557,2.97e-22,19;UBERON:0001911,2.56e-10,4;UBERON:0005333,2.56e-10,4;UBERON:0008425,2.56e-10,4;UBERON:0005311,2.56e-10,4;UBERON:0008947,4.67e-10,38;UBERON:0003258,4.67e-10,38;UBERON:0000072,2.03e-09,47;UBERON:0000065,6.52e-08,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0.579386075843295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04142150482278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44375896333917,6.27026040211173,3.70886318171824,4.09718750801919,8.16175398219715,7.62578054323422,4.50814176311084,4.85392709376592,5.69042248863504,5.38646019724947,0,0,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70161193135412,4.35950907770943,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50719688529793,0,0,0,0,0,0,0,0,0.144781306667579,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,7.40781551929133,0,0,0,0,0,0,0,0.824378340616761,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,6.06950948835232,0,0,0,0,0,0,0.664653872707185,1.323967823502,0.313932918407225,1.19472429772959,0,0,0,0.783939179315021,0,0.17472666824203,0,5.12808555832151,4.60462697642969,4.68058105203293,0,0,0,3.70013196546227,0,0.0633107959558787,1.36885967914362,0.0801588202515337,0,1.19885765749278,0,0,0,0,4.47309128035557,0,0,0,0,0.866851769704557,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0,0,0,0.316801009558219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0.745156835296601,0,0,0,0,2.11739237728355,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0.449803112163605,1.70789252563885,0,1.06336685823198,0,5.25901631490265,0.761610424337591,0,0,1.71856891267982,0,0,1.60011105865261,0,0,0,0,0,1.30497145982606,1.36023555307363,0,3.18157715858408,0,0,3.72782884283802,1.76689145945881,0,0,0,0,0,0,0,0,0,1.31043939538565,1.2288645437686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138314504928436,0,1.42769420259154,0,0,0,1.84841065840541,0.381382095467167,0,0,0,3.83239630536688,0,0,0,0.443568258651136,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.271878931907327,0.131545547125698,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35866559210006,0,0,0,0,0,0.588925401344836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0.535928260312357,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,2.03508171527436,2.02781957167659,0,0,0,0,0,0,0,0 | |||
|short_description=p3@LINC00162 | |||
}} |
Revision as of 14:15, 21 January 2014
Short description: | p3@LINC00162 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LINC00162_5end |
Coexpression cluster: | C2636_Hep2_Mammary_cervical_mesenchymal_mesothelioma_giant_pagetoid |
Association with transcript: | 164bp_to_ENST00000422199, NR_024089, uc002zgo.2_5end |
EntrezGene: | LINC00162 |
HGNC: | 19725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.88e-12 | 253 |
mammary gland epithelial cell | 2.56e-10 | 4 |
mesothelial cell | 1.73e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.75e-40 | 9 |
upper respiratory tract | 2.97e-22 | 19 |
mammary gland | 2.56e-10 | 4 |
mammary bud | 2.56e-10 | 4 |
mammary ridge | 2.56e-10 | 4 |
mammary placode | 2.56e-10 | 4 |
respiratory primordium | 4.67e-10 | 38 |
endoderm of foregut | 4.67e-10 | 38 |
segment of respiratory tract | 2.03e-09 | 47 |
respiratory tract | 6.52e-08 | 54 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.93e-16 | 235 |
disease of cellular proliferation | 1.25e-15 | 239 |
carcinoma | 6.62e-15 | 106 |
cell type cancer | 1.25e-14 | 143 |