FFCP PHASE1:Hg19::chr3:16554403..16554429,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23180 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30278 | |||
|TSSclassifier=strong | |||
|UniProt=C9JRN3 | |||
|association_with_transcript=0bp_to_ENST00000441460,ENST00000449415_5end | |||
|coexpression_cluster_id=C4302 | |||
|description=CAGE_peak_5_at_RFTN1_5end | |||
|id=chr3:16554403..16554429,- | |||
|ontology_enrichment_celltype=CL:0000048!5.12e-14!430;CL:0000738!5.46e-14!140;CL:0000838!1.29e-13!52;CL:0002087!2.02e-13!119;CL:0000542!2.72e-13!53;CL:0000051!2.72e-13!53;CL:0000723!4.09e-13!436;CL:0002320!5.42e-13!365;CL:0000034!2.78e-12!444;CL:0002031!2.89e-12!124;CL:0000134!3.24e-12!358;CL:0000219!6.98e-11!390;CL:0000945!7.60e-10!24;CL:0000826!7.60e-10!24;CL:0000988!4.52e-09!182;CL:0000037!1.08e-07!172;CL:0000566!1.08e-07!172;CL:0002032!1.66e-07!165;CL:0000837!1.66e-07!165;CL:0000144!3.47e-07!625;CL:0002371!4.68e-07!591;CL:0000451!7.50e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000945;3.31e-12;24!CL:0000542;1.00e-09;53!CL:0000990;5.26e-09;8!CL:0000451;1.84e-08;10!CL:0002334;3.28e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.20e-17,52;CL:0000738,9.76e-17,136;CL:0000542,1.24e-16,53;CL:0000051,1.24e-16,53;CL:0002087,9.35e-16,115;CL:0002031,4.96e-15,120;CL:0000945,9.52e-13,24;CL:0000826,9.52e-13,24;CL:0002320,1.87e-12,361;CL:0000988,3.29e-12,177;CL:0000048,5.43e-12,427;CL:0000134,8.00e-12,354;CL:0000219,1.89e-11,386;CL:0000723,2.98e-11,433;CL:0002032,8.44e-11,161;CL:0000837,8.44e-11,161;CL:0000034,1.08e-10,441;CL:0000037,1.52e-10,168;CL:0000990,3.09e-09,8;CL:0000451,1.24e-08,10;CL:0002334,6.12e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000051;1.00e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;6.17e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,8.87e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002384!1.30e-11!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.73e-12,371 | |||
|phase1_expression=1.45342703416445,5.35251309727458,1.55049844505568,6.00439790118782,6.25745532198203,4.36169262050184,0,0,0,0.491467873003018,0,0.218441372130172,0,1.73272894144065,1.32558950291166,2.01697543935533,0.602694528023977,2.19093027116212,0.487932798790507,1.10808952269109,0.612002073732759,2.19418305034661,6.5834277040143,1.64249310087461,3.26410862946487,12.9902789771517,10.0162719128934,11.8853279783656,2.36018566109342,1.15148819429164,0.309632246632152,0,0.30120591877825,0,4.9579008371393,2.41687695228617,0,2.76997704265939,2.20598892217156,1.73608696572681,0.223915474239924,0.32389366601898,0,0,0,0.485168122375632,0.464858073811369,0.411167888021826,0.309706370895104,0.575384784644301,0.256160706529101,0.47296445977717,3.44745680736619,1.93645405075148,6.77132432971709,0.376484679085209,0,0.224723484445085,3.06083892370903,2.24650318953266,7.67204550958849,0,0.598390972864896,0.426224750532694,2.90209238628584,0.56738522469114,7.4738669879469,0.502497330513487,2.08593167368081,0.217188844705117,2.42159801053347,1.10483290796269,3.48108626184973,0.845021145247767,1.27562579979026,1.04829322754188,0.336985893439485,0.450530678524519,0,1.14005097496499,1.59133341759272,1.64397738388171,3.51992488922645,0.546138611262131,1.77901850772711,1.70692089026603,2.40237592221607,0,2.64417949113945,1.90810750907073,5.69212969109448,2.93618594685469,2.29363936875137,0,1.68152568894461,0.263384084775077,0.590129310341499,1.17903228824749,2.05601498999509,2.50779743086017,2.28145586643513,2.8406868344084,0,1.6711568532776,3.53527088969805,2.87994062958707,3.5204502289452,1.5370958367081,2.21100890851793,2.30213066445147,2.76350017785848,1.73881851441031,1.77943875794473,1.07016331235885,0,1.35971211237079,0.766440987203842,0.68725489096526,0.506039384039006,0.95569624297229,1.30216690771284,0,1.35517607169996,1.15187950038977,1.24930726552346,0.947109008176067,0,1.00803371612366,1.33720097891754,1.30341963494519,0,0,1.40648818027883,0,0.50133791063589,0.579386075843295,0,0.486634870302636,0.0945348171640679,0,0.43917392846563,0.654895377488563,0,0,4.21911611751088,4.17911369518241,5.58423434179234,1.90792499444274,0.571994910780128,2.22874500797739,0,0,0,0.56530794192401,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0.949265659568129,0,0,0,0,0,0.633152558322899,0.662045904066094,0.286836620748814,0,1.12135520028461,4.2699598291882,0.98667019366864,0.622422070799533,1.34710672069688,0,0,0,0.234321431833797,0.312160076830321,0.570471821544449,0.149448680551801,0.117434498643765,0.161872944368132,0.280901613404497,1.63323337003915,0.61417158655884,2.27316718586684,2.37600571456411,1.97813543422845,0,0.718618141816238,1.17835279767846,0.500474079487857,0,0.877955241761676,0.612975591598039,0.901428353439581,0.794025282120147,1.25572744982203,1.49490172172997,0.211931901159562,0.300091096084402,0.309157587715317,0.772921620136887,0.37223371266318,1.0126579934476,4.18979122193154,1.00973509697646,0.644349290496095,1.61646056818812,0.355009592516614,0.906768884048762,0.508681776931463,0.386521706326594,0.272746120590835,0.860413786167011,0,0,0.116193942869518,0.207322110030741,0,0,3.12899064659632,3.85944562915731,1.38134921352481,2.78620756819187,2.16563844500876,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0,0.196221465125346,0,0,0,3.7041661019826,1.47008711385542,1.26755034821831,0.982827216677626,1.77236972004421,0,1.47586126251736,1.20097467208968,0.219500570817251,0,0.201057944823262,0.0925884451585296,0.325808305310325,1.03993478527958,0,0.115930404975077,1.6437217193015,0.433099343283221,0,0,0,0,0,0.936017060556951,2.67536092119711,0.93733833986777,0.671928512795438,0.425325291727159,0,0,0,0.492663237895943,0,0.621984346622316,0,0.75745460055828,0,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.1466765716419,0.517086863031111,0,0,3.72313363218819,1.04007436911366,0.257207374262142,0,0.266422179016099,2.7165818795048,0.542621605391443,1.64648067356154,0,3.55391948742546,0,1.20575750823834,4.35766729300147,1.59956785891291,1.2162378064119,0,0,0.718874566474748,1.14861935834114,0,0.723906533337896,0.410952645100767,1.25342674267927,7.95804522354044,3.74358444383662,2.37190332345469,2.18183161675572,0.76228387266739,0,0,0,0,0,2.99161459204025,0,0.981531933753119,2.00068208423871,1.08506009479894,1.24782516918484,0.713715955188647,1.26161932027148,0.819989904948992,1.50473049863859,0,0,0,0.368738337083406,0.434418072340414,0.391602314925481,0,0.620304078368662,2.15714200818617,0.853820462427555,0,0,0,2.72918588600655,5.52463103837025,4.77122160536225,0.768834895534206,4.60536524160033,1.28683136914886,5.93672265779964,1.23367755042124,1.06537035187876,1.8067974323038,2.07701771673448,1.04589340613963,0.483437798366489,0.40101294060657,0,0.459257792658427,2.1850940160806,5.76947425821466,0,0.0770153371044148,0,0,0.949964660035881,0,0.510281115829547,0.215915916102139,0,1.35473218771926,4.01351819083883,0,0,2.0148727924996,0,0,0.769350375349168,1.31205858279882,2.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| |||
|short_description=p5@RFTN1 | |||
}} |
Revision as of 17:43, 21 January 2014
Short description: | p5@RFTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RFTN1_5end |
Coexpression cluster: | C4302_migratory_lymphoma_mycosis_immature_B_Adipocyte_Hair |
Association with transcript: | 0bp_to_ENST00000441460, ENST00000449415_5end |
EntrezGene: | RFTN1 |
HGNC: | 30278 |
UniProt: | C9JRN3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.20e-17 | 52 |
leukocyte | 9.76e-17 | 136 |
lymphocyte | 1.24e-16 | 53 |
common lymphoid progenitor | 1.24e-16 | 53 |
nongranular leukocyte | 9.35e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 4.96e-15 | 120 |
lymphocyte of B lineage | 9.52e-13 | 24 |
pro-B cell | 9.52e-13 | 24 |
connective tissue cell | 1.87e-12 | 361 |
hematopoietic cell | 3.29e-12 | 177 |
multi fate stem cell | 5.43e-12 | 427 |
mesenchymal cell | 8.00e-12 | 354 |
motile cell | 1.89e-11 | 386 |
somatic stem cell | 2.98e-11 | 433 |
hematopoietic oligopotent progenitor cell | 8.44e-11 | 161 |
hematopoietic multipotent progenitor cell | 8.44e-11 | 161 |
stem cell | 1.08e-10 | 441 |
hematopoietic stem cell | 1.52e-10 | 168 |
conventional dendritic cell | 3.09e-09 | 8 |
dendritic cell | 1.24e-08 | 10 |
preadipocyte | 6.12e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 8.73e-12 | 371 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 8.87e-07 | 10 |