FFCP PHASE1:Hg19::chr3:110790546..110790562,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25945 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17664 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NQS3 | |||
|association_with_transcript=-27bp_to_ENST00000485303_5end | |||
|coexpression_cluster_id=C4262 | |||
|description=CAGE_peak_3_at_PVRL3_5end | |||
|id=chr3:110790546..110790562,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.43e-18!180;CL:0000057!6.17e-13!75;CL:0002620!4.60e-09!23;CL:0000220!9.93e-09!246;CL:0002321!1.02e-08!248;CL:0000222!2.04e-08!119;CL:0000393!6.34e-07!60;CL:0000211!6.34e-07!60;CL:0000680!7.10e-07!57;CL:0000056!7.10e-07!57;CL:0000355!7.10e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.68e-10;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.03e-12,76;CL:0002620,3.51e-10,23;CL:0000187,7.66e-08,55;CL:0000393,9.03e-08,61;CL:0000211,9.03e-08,61;CL:0000680,4.30e-07,58;CL:0000056,4.30e-07,58;CL:0000355,4.30e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!6.86e-12!365;UBERON:0000119!1.96e-10!312;UBERON:0000490!5.52e-10!138;UBERON:0000483!7.18e-10!309;UBERON:0000481!1.52e-09!347;UBERON:0000914!2.12e-09!83;UBERON:0002329!2.12e-09!83;UBERON:0003077!2.12e-09!83;UBERON:0003059!2.12e-09!83;UBERON:0007282!2.12e-09!83;UBERON:0009618!2.12e-09!83;UBERON:0007285!2.12e-09!83;UBERON:0000477!2.96e-09!286;UBERON:0005256!1.92e-08!143;UBERON:0004290!1.45e-07!70;UBERON:0000468!8.52e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;3.46e-09;11!UBERON:0001801;3.90e-09;14!UBERON:0002104;1.66e-08;21!UBERON:0007625;3.23e-08;11!UBERON:0000970;8.07e-08;20!UBERON:0001456;1.51e-07;21!UBERON:0000488;3.46e-07;4!UBERON:0000019;3.84e-07;19!UBERON:0000047;3.84e-07;19!UBERON:0004088;3.84e-07;19!UBERON:0010230;3.84e-07;19!UBERON:0001032;5.53e-07;24!UBERON:0004456;5.53e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,3.23e-09,11;UBERON:0001801,3.96e-09,14;UBERON:0000490,4.95e-09,148;UBERON:0001444,5.22e-09,49;UBERON:0003102,2.49e-08,99;UBERON:0007524,2.50e-08,73;UBERON:0000970,2.60e-08,21;UBERON:0002104,2.60e-08,21;UBERON:0007625,3.06e-08,11;UBERON:0001456,4.08e-08,22;UBERON:0002329,6.09e-08,71;UBERON:0003059,6.09e-08,71;UBERON:0007282,6.09e-08,71;UBERON:0004290,6.09e-08,71;UBERON:0009618,6.09e-08,71;UBERON:0000019,1.01e-07,20;UBERON:0000047,1.01e-07,20;UBERON:0010312,1.01e-07,20;UBERON:0004088,1.01e-07,20;UBERON:0010230,1.01e-07,20;UBERON:0003072,1.01e-07,20;UBERON:0004128,1.01e-07,20;UBERON:0003071,1.01e-07,20;UBERON:0003077,1.01e-07,72;UBERON:0007285,1.01e-07,72;UBERON:0000033,1.09e-07,56;UBERON:0007503,2.98e-07,78;UBERON:0000488,3.73e-07,4;UBERON:0002097,6.97e-07,41;UBERON:0000020,8.02e-07,24;UBERON:0001032,8.02e-07,24;UBERON:0004456,8.02e-07,24 | |||
|phase1_expression=0.181678379270557,1.07050261945492,0.422863212287913,1.0007329835313,0,2.61701557230111,0,1.26343974685366,0,0.245733936501509,0,0,0.527533956456907,1.36142988256051,0.331397375727916,2.01697543935533,1.80808358407193,0,0.975865597581014,0.738726348460727,0.204000691244253,0.626909442956176,0.286235987131057,1.23186982565596,4.14290710662849,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0.393010762749165,0.822405995998037,0,0,0,0,0,0,0,0,0.25618263945135,0,0.164437904603676,0,0,0.14828656316206,0.267540828089713,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,4.87613732627923,1.34140171940727,1.15076305659177,0,0,1.30361867064741,0,0,9.26441208207865,8.20398770611487,9.57399164055074,0.72038491523742,0,0,0,0,0,0,0,0,0.198762407366705,2.58070378531837,0.347140501607594,1.13061588384802,1.67799774483962,0.550236083880135,1.25396979922086,0.258416759169329,1.42306505074684,0.66944122552934,0.805658634218294,0,0.488124115096339,2.20597848207521,0,1.60739510911344,0.673588117878509,0.675668882899933,0,0,0.183201743930407,0,0,0,0.496971951695318,1.39293562831038,0.794455084879313,1.43418310374407,0.354668382198357,0,0,0.24666754841716,0.311211035399766,1.61652806483626,1.47115712802113,0.454072282934794,1.15235184896,0.234321431833797,0.936480230490962,0,2.09228152772521,1.76151747965647,1.45685649931318,0.702254033511242,2.24569588380383,1.47401180774122,0.516628905878827,4.75201142912821,8.90160945402805,0,0.718618141816238,0.505008341862199,1.50142223846357,3.04770527032601,3.95079858792754,2.75839016219118,4.5071417671979,1.02088964844019,4.48474089222155,0.85422955527427,0.423863802319124,7.50227740211006,2.37020817248409,5.15281080091258,1.8611685633159,2.53164498361899,1.46155507741798,1.7670364197088,1.10459878370759,0.484938170456436,8.16522062788213,3.22406714328449,0.339121184620975,0.193260853163297,0,0,0.243947412259191,0.265059536642971,0.464775771478074,0.414644220061482,0,1.82488679537915,7.8224766164908,1.28648187638577,0,0.928735856063958,0.721879481669586,0.473227200159376,0.337169380156203,0,0.661763836394364,0.217879444092406,0.474541238222193,0.539325232640658,0.392442930250692,0.38474715694639,1.4763109092493,0,0,0,0,0.982827216677626,0,0.882926198829301,0.614942192715568,4.28919525746314,0.109750285408626,0,0,0.277765335475589,0.325808305310325,2.07986957055916,2.88662684050547,5.10093781890338,4.22671299248958,0.288732895522148,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0,0,0.358234090811393,0.290633938513962,0,0,0,0,0,0,0.126995788584338,0,0,1.71072446022705,0.719792448923265,0,0.571652865261156,1.00917975910825,0.43596006883328,1.98013371716565,0.775630294546667,0,1.690605505112,2.12750493267896,0,1.02882949704857,0,1.0656887160644,3.14551586047925,0.542621605391443,1.64648067356154,0.977208552881205,3.55391948742546,0,0.301439377059586,0,0.899756920638513,0,0,0,3.59437283237374,3.44585807502342,1.42636905040718,0.434343920002738,0.821905290201534,0.716243852959582,0,0,0.215627574859517,0.385029108839245,1.27047312111232,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,1.47229790062968,0.500170521059677,0.813795071099207,1.87173775377726,1.60586089917446,1.57702415033935,1.28855556491985,0.300946099727719,0,1.03473071292505,1.32845119707087,0.368738337083406,0.781952530212746,0,0.343143423810856,0,0,0.106727557803444,0,0,1.5119514666484,0,0.767309866440312,1.12264037773229,0.768834895534206,1.02341449813341,0.804269605718038,1.48418066444991,0.925258162815933,0,0.98552587216571,0.519254429183621,0.464841513839837,0.483437798366489,0.802025881213139,0.0920809889358963,1.03333003348146,2.1850940160806,1.83574180943194,0,0.539107359730903,0,1.46139224653261,0.316654886678627,0,0,2.59099099322567,0,0.812839312631559,0,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0.256450125116389,0,0,2.67906630284078,0.54941678891006,0.247528499761764,0,0,1.6068392984416,0.580024309752732,0.616194468458578,0.460511024178389,1.7918754422989,0.966782203814463,0.725083469571143,1.70453254832202,1.33548053470106,0.330569830721956,0.192190067365106,0.127612712494584,0.10115778085555,0,3.46293581513704,0,1.23213432070436,0,0,0.9266210955196,0.572499546967965,1.48863347743867,3.16379424718726,2.85945290885737,0,1.28381696410176,0,0,1.07923474549989,1.37268514868027,1.41374882814824,0.202182481573316,0,0.842516912477962,0.975267478179181,1.94970791705028,1.05650146756755,1.22849920267187,1.97967604735198,0,0,1.32687795048244,2.63070531152258,0.578775534266688,0.655894752046633,0.608731130888112,0,0.563391205064483,1.43411352204052,2.25972794330179,0,0,0.211107635297664,1.31717957183961,0.379473173765715,1.39973888097993,0.0962221127255121,0.670302275535787,1.08890984861323,3.29503302718727,0.43050537267123,0,0,0.229723400206959,0.507447609232169,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0.853702120180969,0.318852545457645,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,1.19372242368845,2.07875276582847,0,0.994147647766298,0.140669416410513,0.445234820091624,1.97764649072111,0,0.796991953004279,0,0,0.20453736500431,0,1.55519793830904,0.0898683511473268,0.358042349351218,0,0.197286811273867,0,0,0,0.556608588971108,0,0,0.0874599999961957,0.724999575434793,0,0,0.236387681767936,0,0.291604613383254,0.868124974666461,0,0.120596438625408,0,0.221158519862449,0,0.219385397153973,0.32681539055697,0,0.153900517007594,0.455768223388005,0.922255617552241,0,0.217294743844016,0,0.274792780205587,0,1.02193298195737,0.31396051279005,0,0,0,0,0,0,0.421996129056054,1.30586246527318,0.848118428603645,0,0.995261931078505,0.353830258013357,0.611030144933625,0,0.123563938946503,0.417687798021821,0.471807930864739,0.802577647298789,0,0,0,0.485560759068186,0.394584402849391,0,0,0.189559738885464,0,0,0,0,0.941798755221676,0,1.13843818411917,1.24807205711825,0.694238953340524,0,0.522355239482415,0,0,0.967563312890852,0.219267951258557,0.246346371159628,0.290967049465258,0,1.12990370390266,1.78154502040776,0.993573058514948,0.886351143382302,0,0.400794101257669,0.426905989478705,0.39961921916426,0,0,0.857974989309823,0.14405479798815,0.124252535565433,0,0.271808412147228,0.836822770498666,2.3459590056354,1.15580235960608,0.600420288709789,1.09524303113594,0,0,0.788662062837943,0,0.229160424011684,0,0,0,0,0.268733889946905,0.720599767084807,0,0.787831823072237,0.494495150286999,0.404421263125109,0.295282444544246,0,0.795229689809303,0.681017030557878,0.964518890790115,1.37539436597234,1.24632101408756,0,0,0.425246896606173,0,0.236417121897595,0.314727528809989,0.739202355635845,0,0.191915197319445,0,0,0,0,0.864221491201268,2.28611152076586,2.39460383124975,0,2.3854323049959,0.226624183040251,0.439656701034247,2.65013777824443,0,0.66116300871345,1.02652102730598,0.704815022316672,0.427149650270779,0.314408610199332,0.414239055347196,0,0.592834895693833,0,0,0,0,0,0,0.157054096250234,0,0.488105059607853,0.500763722825999,0.573409195690071,0.332787154610557,0.434674820589684,0,0.124980407962107,1.06154382279153,0.285465333544967,0,0,0,0.597019211547496,0,1.10961172300523,0.189403005275089,0.754703705257725,0,0.915360273587694,0.604923695052956,0.466311601748341,1.33069634990671,1.43367090447332,1.79921244865442,1.39736661188633,0,0.53168342911599,0.521745061811734,1.05180326298053,2.28483127301277,1.62748293281865,2.18218391043071,0.966695013382396,0.464033759878494,1.59238355479446,0.400027764663154,0.686791410365586,0.336749488765919,2.52369796457302,0.385239660814607,0,0.521988583930423,0,0.231522474323834,1.46842022703881,1.07453304648892,0.617602894321944,0.657852148736121,0.353378291891762,0.964570191354574,0.506827321959218,1.02496607435179,1.38172136692479,0.303859956177382,0.276516872303462,0,0,0,0.327609848846413,0.245772908753719,0,0.79994958341972,0,0.688859918643263,3.97261167496785,0.368211900503681,0,0,0.127894371303652,0.215649622793364,0,0.109209638192014,0,0,0,0,0.636008701306837,0,0,3.17408349321616,0.918736432059601,0.385375350578757,0,0.638535436228605,0.41023272848151,1.00828678488687,0.0691572524642179,0.645902582527404,1.42769420259154,0,0,0,0,0.762764190934334,0,0,0.451261970095544,0.20170506870352,0,0.785720083444267,0.655087670040387,0.591424344868181,0.472763092328763,0,0.620060389503552,0.570742291745161,0,0,0,0,1.14986184875636,0,0.336283722218824,0,0.227662191351298,6.91878487268583,0,1.71488009437418,0.135939465953663,0.526182188502793,0.236387681767936,0.556157009460346,0.313972371402056,0.157115589916002,2.24217730651031,0,0,0.47775168788705,1.07214816264985,0,0,0,0.801711364730253,0.207216164163037,0,1.38251932362818,0.430227358820278,0.473328002922261,0.255640214277473,0,0.22910686854405,0.31020638566432,0.955538938977433,0.335566295393377,0.098150233615243,0.609589624911347,0,0.102662806856247,0,0.971421986118279,0,0,0,0.11294608203896,0.439762066981716,0,0.154348316215889,0.874238242015829,0,0,0,0.588925401344836,1.48523200163543,0.4226557275834,1.69927114687817,0.187967835959707,0.386747327841463,0,0,0,0.0802413666891683,0,0,0.430018749454354,0,0.271965960763659,0.436350690340377,0.5290268405154,1.48798007266701,0,0,2.27099564703142,0.655593431782173,0.380095503034311,0,0,0,0,0.378893491091197,1.07185652062471,0.829169439458779,0.310298987585686,0.639701945702943,0.23806443146374,0,0.186224142887574,1.12131862580613,1.46388464039779,1.21270313374932,0,0.342233301085281,0.26940821205835,0,0.332660356546013,0.407016343054873,0.640364075266293,5.7921684686082,1.3473780315988,0,0.244482888365733,0,0,0,0 | |||
|short_description=p3@PVRL3 | |||
}} |
Revision as of 20:26, 21 January 2014
Short description: | p3@PVRL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PVRL3_5end |
Coexpression cluster: | C4262_placenta_Ciliary_Fibroblast_Lens_Hair_normal_Smooth |
Association with transcript: | -27bp_to_ENST00000485303_5end |
EntrezGene: | PVRL3 |
HGNC: | 17664 |
UniProt: | Q9NQS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.03e-12 | 76 |
skin fibroblast | 3.51e-10 | 23 |
muscle cell | 7.66e-08 | 55 |
electrically responsive cell | 9.03e-08 | 61 |
electrically active cell | 9.03e-08 | 61 |
muscle precursor cell | 4.30e-07 | 58 |
myoblast | 4.30e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.30e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 3.23e-09 | 11 |
anterior segment of eyeball | 3.96e-09 | 14 |
unilaminar epithelium | 4.95e-09 | 148 |
subdivision of head | 5.22e-09 | 49 |
surface structure | 2.49e-08 | 99 |
dense mesenchyme tissue | 2.50e-08 | 73 |
eye | 2.60e-08 | 21 |
visual system | 2.60e-08 | 21 |
pigment epithelium of eye | 3.06e-08 | 11 |
face | 4.08e-08 | 22 |
somite | 6.09e-08 | 71 |
presomitic mesoderm | 6.09e-08 | 71 |
presumptive segmental plate | 6.09e-08 | 71 |
dermomyotome | 6.09e-08 | 71 |
trunk paraxial mesoderm | 6.09e-08 | 71 |
camera-type eye | 1.01e-07 | 20 |
simple eye | 1.01e-07 | 20 |
immature eye | 1.01e-07 | 20 |
ocular region | 1.01e-07 | 20 |
eyeball of camera-type eye | 1.01e-07 | 20 |
optic cup | 1.01e-07 | 20 |
optic vesicle | 1.01e-07 | 20 |
eye primordium | 1.01e-07 | 20 |
paraxial mesoderm | 1.01e-07 | 72 |
presumptive paraxial mesoderm | 1.01e-07 | 72 |
head | 1.09e-07 | 56 |
epithelial vesicle | 2.98e-07 | 78 |
atypical epithelium | 3.73e-07 | 4 |
skin of body | 6.97e-07 | 41 |
sense organ | 8.02e-07 | 24 |
sensory system | 8.02e-07 | 24 |
entire sense organ system | 8.02e-07 | 24 |