FFCP PHASE1:Hg19::chr6:7347729..7347744,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=6745 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11323 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-50bp_to_ENST00000488834_5end | |||
|description=CAGE_peak_9_at_SSR1_5end | |||
|id=chr6:7347729..7347744,- | |||
|ontology_enrichment_celltype=CL:0000223!2.10e-21!59;CL:0000066!1.25e-20!254;CL:0002076!2.68e-18!43;CL:0000039!1.32e-17!7;CL:0000586!1.32e-17!7;CL:0002251!3.22e-15!21 | |||
|ontology_enrichment_celltype_v019=CL:0000039;6.07e-14;7!CL:0000586;6.07e-14;7!CL:0000313;1.19e-11;1!CL:0002251;1.06e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.21e-14,7;CL:0000586,6.21e-14,7;CL:0000313,1.19e-11,1;CL:0002251,1.10e-08,20;CL:0000066,3.97e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.15e-17;10!UBERON:0005564;8.15e-17;10 | |||
|ontology_enrichment_disease=DOID:0050687!3.73e-31!143;DOID:305!5.78e-31!106;DOID:162!4.17e-19!235;DOID:14566!2.07e-18!239;DOID:3095!9.36e-17!22;DOID:2994!9.36e-17!22;DOID:1749!1.85e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.88e-12;14!DOID:3151;2.63e-12;1!DOID:3149;2.63e-12;1!DOID:2152;1.19e-11;1!DOID:3095;9.16e-08;22!DOID:2994;9.16e-08;22!DOID:305;5.08e-07;106!DOID:299;7.21e-07;25!DOID:3451;8.93e-07;2!DOID:4159;8.93e-07;2!DOID:0060122;8.93e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.72e-20,106;DOID:0050687,1.60e-16,143;DOID:1749,2.00e-12,14;DOID:3151,2.63e-12,1;DOID:3149,2.63e-12,1;DOID:2152,1.19e-11,1;DOID:162,1.63e-10,235;DOID:14566,3.03e-10,239;DOID:3095,9.76e-08,22;DOID:2994,9.76e-08,22;DOID:299,7.10e-07,25;DOID:3451,8.93e-07,2;DOID:4159,8.93e-07,2;DOID:0060122,8.93e-07,2;DOID:7,9.35e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000344!3.75e-16!12;UBERON:0003729!1.05e-13!5;UBERON:0003343!1.66e-11!4;UBERON:0004785!1.66e-11!4;UBERON:0001007!5.22e-10!155;UBERON:0001555!5.22e-10!155;UBERON:0007026!5.22e-10!155;UBERON:0004119!6.61e-10!169;UBERON:0000925!6.61e-10!169;UBERON:0006595!6.61e-10!169;UBERON:0004921!4.41e-08!129;UBERON:0004185!4.41e-08!129;UBERON:0001004!2.15e-07!72;UBERON:0000077!2.36e-07!130;UBERON:0000466!2.73e-07!126;UBERON:0001041!3.67e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;1.29e-24;4!UBERON:0004785;1.29e-24;4!UBERON:0000974;1.24e-16;6!UBERON:0000473;2.83e-12;8!UBERON:0000997;5.05e-12;1!UBERON:0005056;5.05e-12;1!UBERON:0004176;5.05e-12;1!UBERON:0004911;1.19e-11;1!UBERON:0003135;4.48e-09;11!UBERON:0000991;3.98e-08;21!UBERON:0003729;5.75e-08;13!UBERON:0002323;9.51e-08;45!UBERON:0003133;1.97e-07;44!UBERON:0002294;6.02e-07;7!UBERON:0001173;6.02e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,1.40e-24,4;UBERON:0004785,1.40e-24,4;UBERON:0000473,2.89e-12,8;UBERON:0000997,5.62e-12,1;UBERON:0005056,5.62e-12,1;UBERON:0004176,9.57e-12,22;UBERON:0004911,1.19e-11,1;UBERON:0000974,3.41e-10,10;UBERON:0003135,4.54e-09,11;UBERON:0000991,4.02e-08,21;UBERON:0009196,4.02e-08,21;UBERON:0009117,4.02e-08,21;UBERON:0005564,4.02e-08,21;UBERON:0003729,5.89e-08,13;UBERON:0002323,1.03e-07,46;UBERON:0003133,2.09e-07,48;UBERON:0004458,3.24e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0.116193942869518,0,0,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0.109750285408626,0,0,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0,0,0,3.7428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503865495708552,0.102268682502155,0,0,0,5.19161406559267,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0.922255617552241,0.359030577639089,0.108647371922008,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32930774541437,0,0.313932918407225,0,1.70765727617876,0,0.520679215005393,3.03776431984571,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,1.84365286578528,0,0.19980960958213,1.44090417154106,0,0,0,0,6.12804490003668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.65983798109815,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0.482259445395058,0,0,0,0,0,7.37956312718385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0.169732529954025,0,0,1.11728983594649,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45369296252564,0.471878893390961,6.05314375121541,3.46576998451015,0,0,0,0,0.20170506870352,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0.171488009437418,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,0,0,0,0,0,0,0,0,0,1.4541206133713,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707029641304878,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0.504665699340316,0.764859003745869,0.126698501011437,2.75369840303351,1.06886962106224,1.8378979906969,0.50141507858475,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,0,0.134704106029175,0.0717222053926763,0,0.325613074443898,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@SSR1 | |||
}} |
Revision as of 09:51, 22 January 2014
Short description: | p9@SSR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_SSR1_5end |
Coexpression cluster: | NA |
Association with transcript: | -50bp_to_ENST00000488834_5end |
EntrezGene: | SSR1 |
HGNC: | 11323 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.21e-14 | 7 |
germ cell | 6.21e-14 | 7 |
serous secreting cell | 1.19e-11 | 1 |
epithelial cell of alimentary canal | 1.10e-08 | 20 |
epithelial cell | 3.97e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 1.40e-24 | 4 |
respiratory system mucosa | 1.40e-24 | 4 |
testis | 2.89e-12 | 8 |
mammalian vulva | 5.62e-12 | 1 |
external female genitalia | 5.62e-12 | 1 |
external genitalia | 9.57e-12 | 22 |
epithelium of female gonad | 1.19e-11 | 1 |
neck | 3.41e-10 | 10 |
male reproductive organ | 4.54e-09 | 11 |
gonad | 4.02e-08 | 21 |
indifferent external genitalia | 4.02e-08 | 21 |
indifferent gonad | 4.02e-08 | 21 |
gonad primordium | 4.02e-08 | 21 |
mouth mucosa | 5.89e-08 | 13 |
body cavity | 1.03e-07 | 46 |
reproductive organ | 2.09e-07 | 48 |
body cavity or lining | 3.24e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.72e-20 | 106 |
cell type cancer | 1.60e-16 | 143 |
squamous cell carcinoma | 2.00e-12 | 14 |
skin squamous cell carcinoma | 2.63e-12 | 1 |
keratoacanthoma | 2.63e-12 | 1 |
ovary epithelial cancer | 1.19e-11 | 1 |
cancer | 1.63e-10 | 235 |
disease of cellular proliferation | 3.03e-10 | 239 |
germ cell and embryonal cancer | 9.76e-08 | 22 |
germ cell cancer | 9.76e-08 | 22 |
adenocarcinoma | 7.10e-07 | 25 |
skin carcinoma | 8.93e-07 | 2 |
skin cancer | 8.93e-07 | 2 |
integumentary system cancer | 8.93e-07 | 2 |
disease of anatomical entity | 9.35e-07 | 39 |