FFCP PHASE1:Hg19::chr6:7541895..7541916,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1832 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3052 | |||
|TSSclassifier=strong | |||
|UniProt=P15924 | |||
|association_with_transcript=25bp_to_NM_001008844,NM_004415,uc003mxp.1,uc003mxq.1_5end | |||
|coexpression_cluster_id=C2548 | |||
|description=CAGE_peak_1_at_DSP_5end | |||
|id=chr6:7541895..7541916,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.14e-27!254;CL:0000223!1.09e-16!59;CL:0002076!4.72e-15!43;CL:0002251!1.30e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.90e-12;42!CL:0002251;2.77e-09;20!CL:0002368;6.89e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.53e-28,253;CL:0000223,8.47e-18,58;CL:0002076,3.12e-16,42;CL:0002251,2.73e-09,20;CL:0002368,7.10e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000223;1.09e-09;58!UBERON:0006595;1.48e-07;86 | |||
|ontology_enrichment_disease=DOID:305!2.06e-18!106;DOID:0050687!4.93e-12!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.76e-18,106;DOID:0050687,1.27e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.19e-21!169;UBERON:0000925!2.19e-21!169;UBERON:0006595!2.19e-21!169;UBERON:0001007!1.96e-17!155;UBERON:0001555!1.96e-17!155;UBERON:0007026!1.96e-17!155;UBERON:0000062!1.22e-15!511;UBERON:0000077!2.36e-15!130;UBERON:0004921!2.82e-15!129;UBERON:0004185!2.82e-15!129;UBERON:0000468!4.74e-15!659;UBERON:0001041!5.01e-13!98;UBERON:0001004!1.49e-12!72;UBERON:0000466!7.52e-12!126;UBERON:0000475!1.91e-11!365;UBERON:0000481!3.36e-11!347;UBERON:0000467!4.95e-11!625;UBERON:0000480!8.51e-11!626;UBERON:0000064!1.28e-10!219;UBERON:0000464!7.67e-10!104;UBERON:0009569!7.81e-10!113;UBERON:0003104!1.34e-09!238;UBERON:0009142!1.34e-09!238;UBERON:0001048!3.43e-09!168;UBERON:0000065!9.64e-09!53;UBERON:0005911!2.82e-08!82;UBERON:0000922!1.07e-07!612;UBERON:0005177!1.77e-07!107;UBERON:0004923!4.10e-07!57;UBERON:0008947!4.84e-07!38;UBERON:0003258!4.84e-07!38;UBERON:0002365!6.93e-07!31;UBERON:0002330!6.93e-07!31;UBERON:0002050!8.62e-07!605;UBERON:0005423!8.62e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.11e-08;33!UBERON:0002365;2.72e-07;31!UBERON:0002330;2.72e-07;31!UBERON:0001041;7.95e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.08e-21,160;UBERON:0000925,1.08e-21,160;UBERON:0006595,1.08e-21,160;UBERON:0001007,6.97e-18,145;UBERON:0001555,6.97e-18,145;UBERON:0007026,6.97e-18,145;UBERON:0004921,9.30e-16,118;UBERON:0001041,2.77e-13,87;UBERON:0001004,2.04e-12,74;UBERON:0009569,2.78e-10,112;UBERON:0001048,5.15e-09,160;UBERON:0005911,1.06e-08,82;UBERON:0000065,1.61e-08,54;UBERON:0002365,2.06e-07,31;UBERON:0002330,2.06e-07,31;UBERON:0005177,2.59e-07,101;UBERON:0002530,3.88e-07,59;UBERON:0008947,7.79e-07,38;UBERON:0003258,7.79e-07,38;UBERON:0003102,8.60e-07,99;UBERON:0000166,8.85e-07,22 | |||
|phase1_expression=70.6728895362465,27.6189675819368,25.9356103536587,34.0249214400643,10.2801051718276,12.2127393374052,5.06599756336621,1.89515962028049,0.522371256399677,10.0750913965619,16.0494268633658,28.6158197490526,33.2346392567852,0.37129905888014,0.994192127183747,1.34465029290355,0,0.730310090387373,0,0,0,0,0.572471974262113,0.273748850145768,2.63639543149086,0,0,0,0,0,2.63187409637329,100.216913468203,104.819659734831,92.0687485315301,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0.464858073811369,0,0,0,0.256160706529101,0,0,0.645484683583826,0,0,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,67.8047442949373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.04684627245127,8.02773779062981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,1.00267582127178,0.724232594804119,0,3.40644409211845,2.17430079477356,3.76939975686359,3.16205228495254,5.23916301990851,78.6877822711891,208.380856844849,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0.258416759169329,0.71153252537342,0.33472061276467,0.805658634218294,3.80136052859256,10.4946684745713,0,0,0,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,99.4294438884978,116.7884086484,3.92554586160197,8.474187572046,2.0078563452417,1.77334191099179,11.2135520028461,41.6321083345849,36.0134620689054,0,0.134710672069688,0.653847612453835,0.756787138224657,6.91411109375999,0.234321431833797,0.624320153660641,2.85235910772225,0.149448680551801,0.469737994575059,0.647491777472526,0.842704840213491,0,0.61417158655884,0,1.18800285728205,4.45080472701402,0,0,0,0.500474079487857,0,7.46261955497424,9.80760946556863,14.1223775372201,1.13432183160021,20.6298081042191,2.98980344345994,3.81477422087211,35.1106582418751,3.09157587715317,34.7814729061599,9.30584281657949,29.5358581422216,11.9847516348274,52.5062250427758,6.35144300631865,8.56724101139703,39.0510551768276,9.36994513517054,8.30846902321389,144.559118166146,124.644977110011,122.752366826494,4.39105342066543,6.09636934278832,8.71454571521388,13.8905813720596,15.643892754289,4.74470566798579,12.5159625863853,1.92972281457866,0,3.25057549622385,7.21879481669586,27.0922572091243,26.467796342262,31.8134559446196,26.9117293467041,20.916426632871,30.8451804844426,28.5842373299549,27.0785621872978,27.7017953001401,0,4.20725321410337,2.057870056657,0,89.9960747234999,63.8837690840457,107.523763016016,0,28.9022830576317,3.25978839567199,432.964875937028,79.8052448129099,125.862273459362,172.955215556133,0,0,1.44331342025273,1.62302566965108,17.9635302180807,2.7429625074604,1.38895653772983,6.84914948044554,50.5730814693936,63.5279759950206,0.246217006087397,0.936017060556951,0.594524649154913,39.3682102744463,74.9200291766914,58.2695649666208,179.743955064617,110.150262696792,111.180976957911,0,0,8.70778085271243,10.0883967391873,5.93339437103986,0.507983154337352,0,0,18.8179690624976,0,0,0.571652865261156,0.897048674762886,1.74384027533312,1.9067954313447,18.0980402060889,0,0.845302752556,9.57377219705534,5.2003718455683,0,4.25547396069835,0.532844358032199,0,0,0.823240336780769,0.325736184293735,0.355391948742546,0,3.01439377059586,6.10073421020206,4.79870357673874,0,0,0,121.489801734232,73.5116389338329,17.1164286048862,27.2188856535049,2.05476322550383,13.2505112797523,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0.828831026872071,0.49076596687656,1.50051156317903,0.271265023699736,46.37750212137,33.0093629274749,40.5295206637212,36.8995457227047,16.2510893852968,6.82222512167955,9.31257641632544,39.8535359121262,24.8898377531299,0,1.17480694477644,0.343143423810856,0.82707210449155,0,0.640365346820666,53.6535801459879,16.6435439510497,37.1940060795507,77.6577438472772,243.083765688291,48.2735362424887,24.9871341048617,29.6790204458688,65.9501076688791,11.8734453155993,3.23840356985577,10.1210183428482,1.56041596426237,0.519254429183621,2.20799719073923,32.632051389738,103.260832206192,262.062494511561,0,0,0.655622074797121,12.6335891614075,23.1816164684288,7.0591479225917,11.6911379722609,19.527051345182,0,0,10.5798798890048,7.71136263451447,2.43851793789468,8.02703638167765,9.68529837571146,18.2836721964319,6.94011739638753,0,0,2.82095137628028,1.96808787419823,4.88067591996455,42.9681018571002,0,0,145.863446651028,189.167531596628,0,1.35339005608971,0,0.15350367472613,0,0.107420244868274,0.870100163485371,0.340906509664404,4.00644160410318,136.690625003529,191.036926960916,115.234279382609,282.129050806129,2.78907329578371,8.81474571125792,1.3940745403212,0.308033580176089,8.51689648507235,1.73986598415015,1.48259375283136,26.7643538207524,2.232950216158,2.53103539774981,1.14378116354295,0,0,0,3.92474320099615,0,0,0,6.67202189191943,0,0.421258456238981,0,2.92456187557541,1.05650146756755,0.272999822815972,0,0,7.71911480964574,2.65375590096488,8.33056681982149,0,0.655894752046633,1.62328301570163,2.78841148289775,1.12678241012897,0,0.491245205065606,2.49669736036875,0,2.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| |||
|short_description=p1@DSP | |||
}} |
Revision as of 09:51, 22 January 2014
Short description: | p1@DSP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DSP_5end |
Coexpression cluster: | C2548_salivary_immature_tongue_esophagus_amniotic_cervical_Corneal |
Association with transcript: | 25bp_to_NM_001008844, NM_004415, uc003mxp.1, uc003mxq.1_5end |
EntrezGene: | DSP |
HGNC: | 3052 |
UniProt: | P15924 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.53e-28 | 253 |
endodermal cell | 8.47e-18 | 58 |
endo-epithelial cell | 3.12e-16 | 42 |
epithelial cell of alimentary canal | 2.73e-09 | 20 |
respiratory epithelial cell | 7.10e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.08e-21 | 160 |
endoderm | 1.08e-21 | 160 |
presumptive endoderm | 1.08e-21 | 160 |
digestive system | 6.97e-18 | 145 |
digestive tract | 6.97e-18 | 145 |
primitive gut | 6.97e-18 | 145 |
subdivision of digestive tract | 9.30e-16 | 118 |
foregut | 2.77e-13 | 87 |
respiratory system | 2.04e-12 | 74 |
subdivision of trunk | 2.78e-10 | 112 |
primordium | 5.15e-09 | 160 |
endo-epithelium | 1.06e-08 | 82 |
respiratory tract | 1.61e-08 | 54 |
exocrine gland | 2.06e-07 | 31 |
exocrine system | 2.06e-07 | 31 |
trunk region element | 2.59e-07 | 101 |
gland | 3.88e-07 | 59 |
respiratory primordium | 7.79e-07 | 38 |
endoderm of foregut | 7.79e-07 | 38 |
surface structure | 8.60e-07 | 99 |
oral opening | 8.85e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.76e-18 | 106 |
cell type cancer | 1.27e-11 | 143 |