FFCP PHASE1:Hg19::chr8:120428709..120428716,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4856 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7885 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=19bp_to_ENST00000520082_5end | |||
|coexpression_cluster_id=C4722 | |||
|description=CAGE_peak_4_at_NOV_5end | |||
|id=chr8:120428709..120428716,+ | |||
|ontology_enrichment_celltype=CL:0000147!2.23e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000148;4.61e-14;10!CL:0002566;3.39e-10;1!CL:0000147;4.22e-10;14!CL:0000075;7.64e-08;27!CL:0000710;4.09e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.64e-14,10;CL:0000541,3.64e-14,10;CL:0002566,3.10e-10,1;CL:0000147,3.57e-10,14;CL:0000066,3.43e-09,253;CL:0000075,7.20e-08,27;CL:0000710,3.65e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.89e-23;29 | |||
|ontology_enrichment_disease=DOID:305!9.28e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.40e-13,106;DOID:0050687,1.90e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.23e-12!9;UBERON:0007023!2.92e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.69e-76;9!UBERON:0001557;1.69e-76;9!UBERON:0000072;1.22e-16;37!UBERON:0000065;4.40e-14;44!UBERON:0001004;1.78e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.43e-76,9;UBERON:0001557,1.61e-35,19;UBERON:0008947,3.71e-17,38;UBERON:0003258,3.71e-17,38;UBERON:0000072,1.24e-13,47;UBERON:0000065,1.06e-11,54;UBERON:0001041,1.93e-08,87;UBERON:0001004,3.42e-08,74 | |||
|phase1_expression=0.54503513781167,0,0,0,0,0.872338524100369,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0.422510572623884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0,0.179389635688862,0,0.211931901159562,0,0,0,0.18611685633159,0.506328996723799,0.0974370051611986,0,0,0.161646056818812,0,0.201504196455281,0,0,0,0,0,0,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,1.77460200059766,2.52877035117153,2.16909926895134,2.20587945464788,2.39667388501647,2.37270619111097,1.75280700608214,2.35465758150415,1.92373578473195,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0.462985512576611,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.576479813667846,0.6312121671319,2.47641787739459,1.90994212779139,0,0,1.43958489784653,0.600686115687835,2.85826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,2.60279707715243,0.773288812777695,0,0,0.749007023947182,0,0,0,0,0,0.207970861530807,0.356857977594324,0.315404830067869,0,0,0,0,0,0,0.521301686808497,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0.256450125116389,0.656029291399411,0.650756789328606,0.103041011647722,0,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.405820753925408,0,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.222617410045812,0,0,5.37969568277888,0,0.251932747854276,0.102268682502155,0,0.311039587661807,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0.291604613383254,0,0,0,0,0.110579259931225,0,0.87754158861589,0.544692317594951,0.41827123283581,0.230850775511391,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0.216388639742091,0,0.0884575645033392,0,0,0.123563938946503,0.104421949505455,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.189559738885464,0,0.311064574191741,0,0,0,0,1.13843818411917,0,0,0.0979923974143777,0.0870592065804026,0,0,0.290268993867255,0.877071805034227,0.821154570532092,0,0,0.225980740780532,0,0,0.569797163602908,0,0.0801588202515337,0,2.59752492456769,0,0,0,0,0.124252535565433,0,0.135904206073614,0.313808538937,0,0,0,0.273810757783986,0,0,0.788662062837943,0,0.916641696046735,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0.77380195455795,0.425246896606173,0,0.236417121897595,0.472091293214983,0.211200673038813,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0.226624183040251,0,0,0,0,0.171086837884329,0,0.106787412567695,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.110929051536852,0.18628920882415,0,0.124980407962107,0.758245587708239,0.570930667089935,0,0,0,0,0,0,0.568209015825267,0,0.889811221596536,0,0.302461847526478,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0,0,0,0.453411851024545,0,0,0.179088841081487,0.308801447160972,0.438568099157414,0,0,0,0.256241518587947,0.345430341731199,0.303859956177382,0,0,0,0,0,0.491545817507439,0,0,0.213383459388282,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.192687675289379,0,0,0.205116364240755,0,0.414943514785307,0.484426936895553,0,0,0.11796972334774,0,0,0,0,8.35448132888354,0,0,0,0,0.163771917510097,0.147856086217045,0.270150338473579,0,0,0.317079050969534,0,0,0,0,0,0,0.336283722218824,2.42786241694653,0,0,0,0.171488009437418,0.0679697329768317,0.197318320688547,0,0.889851215136553,0.549451649953598,0.157115589916002,0.280272163313789,0,0,0.47775168788705,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.9164274741762,1.24082554265728,0.955538938977433,0,0,0,0,0,0,0,0,3.38216317774326,0,0,0,0.603851374266694,0.0771741581079447,0,0,0.245148321753905,0,0.196308467114945,0,0,0.169927114687817,0.0939839179798536,0,0,0,0,0,0,0,0,0,0.339957450954573,0,0,0,0.924351257262837,0,0,0,0,0.305966489225945,0,0,0,0,0.267964130156178,0,0,0.426467963801962,0,0.0645889098360061,0,0,0.12729431655633,0,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0.0898252021065869,0,0.366724332548599,0,0,0.201273793591026,0 | |||
|short_description=p4@NOV | |||
}} |
Revision as of 23:31, 22 January 2014
Short description: | p4@NOV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NOV_5end |
Coexpression cluster: | C4722_osteosarcoma_Neutrophils_aorta_Melanocyte_melanoma_Eosinophils_medial |
Association with transcript: | 19bp_to_ENST00000520082_5end |
EntrezGene: | NOV |
HGNC: | 7885 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.64e-14 | 10 |
melanoblast | 3.64e-14 | 10 |
dark melanocyte | 3.10e-10 | 1 |
pigment cell | 3.57e-10 | 14 |
epithelial cell | 3.43e-09 | 253 |
columnar/cuboidal epithelial cell | 7.20e-08 | 27 |
neurecto-epithelial cell | 3.65e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.43e-76 | 9 |
upper respiratory tract | 1.61e-35 | 19 |
respiratory primordium | 3.71e-17 | 38 |
endoderm of foregut | 3.71e-17 | 38 |
segment of respiratory tract | 1.24e-13 | 47 |
respiratory tract | 1.06e-11 | 54 |
foregut | 1.93e-08 | 87 |
respiratory system | 3.42e-08 | 74 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.40e-13 | 106 |
cell type cancer | 1.90e-09 | 143 |