FFCP PHASE1:Hg19::chr9:140350189..140350212,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26012 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29843 | |||
|TSSclassifier=not | |||
|UniProt=Q6X4W1 | |||
|association_with_transcript=-440bp_to_AL389944_5end | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_30_at_NELF_5end | |||
|id=chr9:140350189..140350212,- | |||
|ontology_enrichment_celltype=CL:0002127!1.19e-11!1;CL:0000914!1.19e-11!1;CL:0000911!1.19e-11!1;CL:0000814!1.19e-11!1;CL:0002042!1.19e-11!1;CL:0002039!1.19e-11!1;CL:0002040!1.19e-11!1;CL:0002041!1.19e-11!1 | |||
|ontology_enrichment_celltype_v019=CL:0000322;4.27e-34;3!CL:0002202;2.19e-12;9!CL:0002632;2.19e-12;9!CL:0002368;5.28e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,4.27e-34,3;CL:0002202,2.19e-12,9;CL:0002632,2.19e-12,9;CL:0002368,5.28e-09,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050619!2.93e-12!1;DOID:1357!2.93e-12!1;DOID:6193!5.62e-12!1;DOID:1325!4.20e-07!7;DOID:3904!4.20e-07!7;DOID:3910!8.93e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:0050619;2.55e-98;1!DOID:1357;2.55e-98;1!DOID:3910;2.74e-50;2!DOID:0050615;7.63e-26;16!DOID:3908;4.21e-21;5!DOID:1325;1.65e-15;7!DOID:3904;1.65e-15;7!DOID:3905;2.19e-12;9!DOID:1324;5.55e-08;15 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,2.55e-98,1;DOID:1357,2.55e-98,1;DOID:3910,2.74e-50,2;DOID:0050615,7.63e-26,16;DOID:3908,4.21e-21,5;DOID:1325,1.65e-15,7;DOID:3904,1.65e-15,7;DOID:3905,2.19e-12,9;DOID:1324,5.55e-08,15 | |||
|ontology_enrichment_uberon=UBERON:0001764!2.93e-12!1;UBERON:0001825!2.93e-12!1;UBERON:0002038!6.97e-12!1;UBERON:0009661!6.97e-12!1;UBERON:0009663!5.19e-07!7;UBERON:0004903!8.93e-07!2;UBERON:0002173!8.93e-07!2;UBERON:0002186!8.93e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;2.55e-98;1!UBERON:0001825;2.55e-98;1!UBERON:0004903;2.74e-50;2!UBERON:0002173;2.74e-50;2!UBERON:0002186;2.74e-50;2!UBERON:0004821;4.27e-34;3!UBERON:0007499;4.27e-34;3!UBERON:0003215;4.27e-34;3!UBERON:0010368;4.27e-34;3!UBERON:0009911;4.27e-34;3!UBERON:0002299;4.27e-34;3!UBERON:0006524;4.27e-34;3!UBERON:0008874;4.27e-34;3!UBERON:0002169;4.27e-34;3!UBERON:0004894;4.27e-34;3!UBERON:0009856;5.56e-26;4!UBERON:0000058;2.73e-11;10!UBERON:0007196;5.55e-08;15!UBERON:0001558;5.55e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,2.55e-98,1;UBERON:0001825,2.55e-98,1;UBERON:0004903,2.74e-50,2;UBERON:0002173,2.74e-50,2;UBERON:0002186,2.74e-50,2;UBERON:0004821,4.27e-34,3;UBERON:0003215,4.27e-34,3;UBERON:0010368,4.27e-34,3;UBERON:0009911,4.27e-34,3;UBERON:0002299,4.27e-34,3;UBERON:0006524,4.27e-34,3;UBERON:0008874,4.27e-34,3;UBERON:0002169,4.27e-34,3;UBERON:0004894,4.27e-34,3;UBERON:0007196,5.55e-08,15;UBERON:0001558,5.55e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.09235669780522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0.121792598380896,0,0,0,0,0,1.57054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33883824611688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p30@NELF | |||
}} |
Revision as of 04:20, 23 January 2014
Short description: | p30@NELF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_30_at_NELF_5end |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | -440bp_to_AL389944_5end |
EntrezGene: | NELF |
HGNC: | 29843 |
UniProt: | Q6X4W1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 4.27e-34 | 3 |
epithelial cell of tracheobronchial tree | 2.19e-12 | 9 |
epithelial cell of lower respiratory tract | 2.19e-12 | 9 |
respiratory epithelial cell | 5.28e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 2.55e-98 | 1 |
paranasal sinus | 2.55e-98 | 1 |
bronchoalveolar duct junction | 2.74e-50 | 2 |
alveolar duct | 2.74e-50 | 2 |
bronchiole | 2.74e-50 | 2 |
pulmonary alveolus epithelium | 4.27e-34 | 3 |
alveolus | 4.27e-34 | 3 |
pulmonary lobule | 4.27e-34 | 3 |
lobule | 4.27e-34 | 3 |
alveolus of lung | 4.27e-34 | 3 |
alveolar system | 4.27e-34 | 3 |
pulmonary acinus | 4.27e-34 | 3 |
alveolar sac | 4.27e-34 | 3 |
alveolar wall | 4.27e-34 | 3 |
tracheobronchial tree | 5.55e-08 | 15 |
lower respiratory tract | 5.55e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 2.55e-98 | 1 |
maxillary sinus cancer | 2.55e-98 | 1 |
lung adenocarcinoma | 2.74e-50 | 2 |
respiratory system cancer | 7.63e-26 | 16 |
non-small cell lung carcinoma | 4.21e-21 | 5 |
bronchus cancer | 1.65e-15 | 7 |
bronchogenic carcinoma | 1.65e-15 | 7 |
lung carcinoma | 2.19e-12 | 9 |
lung cancer | 5.55e-08 | 15 |