FFCP PHASE1:Hg19::chrX:31284990..31284993,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1756 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2928 | |||
|TSSclassifier=strong | |||
|UniProt=E9PDN1 | |||
|association_with_transcript=-16bp_to_ENST00000378702_5end | |||
|description=CAGE_peak_17_at_DMD_5end | |||
|id=chrX:31284990..31284993,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002590;4.87e-20;3!CL:0002195;2.23e-08;2!CL:0002549;2.23e-08;2!CL:0002571;2.23e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002590,3.32e-20,3;CL:0002195,1.73e-08,2;CL:0002571,1.73e-08,2;CL:0002549,1.86e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.92e-15;1!DOID:0060061;1.92e-15;1!DOID:8691;1.92e-15;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.54e-15,1;DOID:0060061,1.54e-15,1;DOID:8691,1.54e-15,1 | |||
|ontology_enrichment_uberon=UBERON:0002616!5.39e-21!59;UBERON:0001893!5.53e-21!34;UBERON:0001017!2.09e-20!82;UBERON:0002791!5.06e-20!33;UBERON:0005743!5.24e-20!86;UBERON:0000955!5.75e-20!69;UBERON:0006238!5.75e-20!69;UBERON:0001869!1.75e-19!32;UBERON:0002020!1.01e-17!34;UBERON:0003528!1.01e-17!34;UBERON:0002780!1.29e-17!41;UBERON:0001890!1.29e-17!41;UBERON:0006240!1.29e-17!41;UBERON:0001049!2.65e-17!57;UBERON:0005068!2.65e-17!57;UBERON:0006241!2.65e-17!57;UBERON:0007135!2.65e-17!57;UBERON:0003080!5.36e-17!42;UBERON:0000073!8.21e-17!94;UBERON:0001016!8.21e-17!94;UBERON:0003075!1.36e-16!86;UBERON:0007284!1.36e-16!86;UBERON:0000956!3.16e-16!25;UBERON:0000203!3.16e-16!25;UBERON:0002346!2.75e-15!90;UBERON:0007023!5.60e-15!115;UBERON:0003056!8.71e-15!61;UBERON:0002619!2.12e-13!22;UBERON:0000153!9.05e-13!129;UBERON:0007811!9.05e-13!129;UBERON:0000033!1.76e-12!123;UBERON:0001950!1.73e-11!20;UBERON:0004121!1.20e-09!169;UBERON:0000924!4.27e-09!173;UBERON:0006601!4.27e-09!173;UBERON:0000477!1.21e-08!286;UBERON:0000062!1.44e-07!511;UBERON:0000481!4.90e-07!347;UBERON:0000119!9.18e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0005284;3.46e-26;5!UBERON:0006876;2.84e-12;11!UBERON:0001954;2.23e-08;2!UBERON:0005629;2.23e-08;2!UBERON:0003022;2.23e-08;2!UBERON:0005358;2.23e-08;2!UBERON:0001886;2.23e-08;2!UBERON:0002421;2.23e-08;2!UBERON:0004086;2.23e-08;2!UBERON:0002600;2.23e-08;2!UBERON:0005282;2.23e-08;2!UBERON:0005281;2.23e-08;2!UBERON:0002107;2.45e-07;19!UBERON:0006925;2.45e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,1.98e-26,5;UBERON:0006876,2.21e-12,11;UBERON:0000955,2.06e-09,68;UBERON:0006238,2.06e-09,68;UBERON:0005629,1.86e-08,2;UBERON:0005358,1.86e-08,2;UBERON:0001886,1.86e-08,2;UBERON:0004086,1.86e-08,2;UBERON:0005282,1.86e-08,2;UBERON:0005281,1.86e-08,2;UBERON:0001954,2.15e-08,2;UBERON:0003022,2.15e-08,2;UBERON:0002421,2.15e-08,2;UBERON:0002600,2.15e-08,2;UBERON:0001017,7.46e-08,81;UBERON:0002107,2.27e-07,19;UBERON:0006925,2.27e-07,19;UBERON:0008836,2.27e-07,19;UBERON:0001016,4.97e-07,89 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665188192387692,0.702678285545008,0,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,2.1349799145941,0.24666754841716,0.622422070799533,0,0,1.66493170409425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.226864366320042,0,0,0,0,0,0.772921620136887,0.18611685633159,0,0.194874010322397,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0.354920400119532,0,0.241011029883482,0.110293972732394,0,0,0,0.196221465125346,0.38474715694639,0,0,0,1.47008711385542,2.53510069643662,0,0,0,0,0.343135620597051,0.219500570817251,0,0,0,0,0,0,0,2.34817388471643,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0.714889968290738,0,0,0,1.77695974371273,0,0,0,0,0,0,0,0.718874566474748,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0.195801157462741,0,0,0.215714200818617,0,0,0,0,0.248107807818777,0,0,0,0,0.321707842287215,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0.143124886741991,2.232950216158,1.89827654831236,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0.551365343546124,0,0,0.578775534266688,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0,0.556608588971108,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.120596438625408,1.52581736317083,0.331737779793674,0,0.658156191461918,0.21787692703798,0.139423744278603,0,0.227884111694002,0.23056390438806,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0.802577647298789,0.468528891450678,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0.0967563312890851,0.365446585430928,0.246346371159628,0,0.529536760149002,0,0,0,0.189932387867636,0,0,0.85381197895741,0.19980960958213,0,0,0,0,0,0.235694034616795,1.35904206073614,1.46443984837266,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0.223171457441873,0.201550417460179,0,0,0.0787831823072236,0,0.0674035438541849,0,0,1.59045937961861,0.136203406111576,0,0.137539436597234,0,0,0,0.607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0.78602152549833,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0.366078794705889,0.250381861413,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0.302461847526478,0,0,0.159296767163702,0,0,0,0,0,0,0.380805212168795,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0.617602894321944,0.219284049578707,0.176689145945881,0,0,0,1.0362910251936,0,0.276516872303462,0,0,0,0,0,0,1.59989916683944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,0,0.205116364240755,0.504143392443436,0.414943514785307,0.645902582527404,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0.270150338473579,0.781078098613847,0.413373593002368,0.443910671357348,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0.342976018874837,0.271878931907327,0.526182188502793,0,0,0.39246546425257,0.314231179832004,0,0,0.431855182437243,0,0.357382720883282,0,0,0,0,0,0.17071847709395,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0.485710993059139,0.233939463462106,0,0,0,0,0,0,0,0,0.735444965261716,0,0.392616934229891,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0.143339583151451,0,0.543931921527318,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0,0.250707539292375,0.0757786982182394,0,0,0,0.213233981900981,0.476128862927481,0,0,0.897054900644907,0.12729431655633,0,0,0,0,0.0717222053926763,0,0.162806537221949,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p17@DMD | |||
}} |
Revision as of 05:11, 23 January 2014
Short description: | p17@DMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_DMD_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENST00000378702_5end |
EntrezGene: | DMD |
HGNC: | 2928 |
UniProt: | E9PDN1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the brain vasculature | 3.32e-20 | 3 |
hepatic stem cell | 1.73e-08 | 2 |
hepatic mesenchymal stem cell | 1.73e-08 | 2 |
fibroblast of choroid plexus | 1.86e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 1.98e-26 | 5 |
vasculature of organ | 2.21e-12 | 11 |
brain | 2.06e-09 | 68 |
future brain | 2.06e-09 | 68 |
vascular plexus | 1.86e-08 | 2 |
ventricle of nervous system | 1.86e-08 | 2 |
choroid plexus | 1.86e-08 | 2 |
brain ventricle | 1.86e-08 | 2 |
ventricular system of brain | 1.86e-08 | 2 |
ventricular system of central nervous system | 1.86e-08 | 2 |
Ammon's horn | 2.15e-08 | 2 |
lobe parts of cerebral cortex | 2.15e-08 | 2 |
hippocampal formation | 2.15e-08 | 2 |
limbic lobe | 2.15e-08 | 2 |
central nervous system | 7.46e-08 | 81 |
liver | 2.27e-07 | 19 |
digestive gland | 2.27e-07 | 19 |
liver bud | 2.27e-07 | 19 |
nervous system | 4.97e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.54e-15 | 1 |
cutaneous T cell lymphoma | 1.54e-15 | 1 |
mycosis fungoides | 1.54e-15 | 1 |