UBERON:0001474: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=bone | |name=bone element | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
Latest revision as of 17:18, 12 September 2014
| Name: | bone element | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Skeletal element that is composed of bone tissue[VSAO]." [VSAO:0000057, Wikipedia:Bone] | ||
| Xrefs: |
| ||
| Synonyms: |
"bone element" EXACT [VSAO:0000057] "bone organ" EXACT [] | ||
| Comments: | Alternate definition: Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA] | ||
| Alt_id: | UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514 | ||
| Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004765(skeletal element) |
|---|---|
| disjoint_from: | UBERON:0001630(muscle organ),UBERON:0005090(muscle structure),UBERON:0010538(paired limb/fin segment) |
| part_of: | UBERON:0001434(skeletal system) |
Children
| is a: | UBERON:0002495 (long bone),UBERON:0002513 (endochondral bone),UBERON:0002514 (intramembranous bone),UBERON:0007842 (membrane bone),UBERON:0007914 (head or neck bone),UBERON:0008001 (irregular bone),UBERON:0008202 (bone of hip region),UBERON:0010740 (bone of appendage girdle complex),FF:0100372 (bone cancer cell) |
|---|---|
| disjoint from: | UBERON:0000982 (skeletal joint),UBERON:0001434 (skeletal system) |
| part of: | CL:0000092 (osteoclast),CL:0001035 (bone cell),UBERON:0002371 (bone marrow),UBERON:0002481 (bone tissue),UBERON:0005913 (zone of bone organ) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10192-103E3 (bone marrow, adult)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10445-106F4
- 10474-106I6 (myeloma cell line:PCM6)
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10574-108B7
- 10586-108D1
... further results Mouse (Mus musculus)
- 10192-103E3 (bone marrow, adult)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10445-106F4
- 10474-106I6 (myeloma cell line:PCM6)
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10574-108B7
- 10586-108D1
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001474 (bone element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.59e-110 | FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_98b13c3fdcd2604ce2180d24cf7987e2 | p@chr1:161187824..161187847, + |
| 9.59e-110 | FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_98b13c3fdcd2604ce2180d24cf7987e2 | p@chr1:161187824..161187847, + |
| 1.51e-105 | FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_440a2da583ea459e18a48c468d8c2c73 | p@chr16:50313426..50313459, + |
| 1.51e-105 | FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_440a2da583ea459e18a48c468d8c2c73 | p@chr16:50313426..50313459, + |
| 1.73e-105 | FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_a5b1daabd945ec51816cbfbfe51dec48 | p@chr1:161188661..161188679, + |
| 1.73e-105 | FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_a5b1daabd945ec51816cbfbfe51dec48 | p@chr1:161188661..161188679, + |
| 6.7e-104 | FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_adb87788aa53f513bd48bbfcfa9aa60a | p7@EMILIN2 |
| 6.7e-104 | FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_adb87788aa53f513bd48bbfcfa9aa60a | p7@EMILIN2 |
| 8.62e-104 | FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_2b88a603ac0040e237a99edbd6826121 | p@chr7:77050554..77050601, + |
| 8.62e-104 | FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_2b88a603ac0040e237a99edbd6826121 | p@chr7:77050554..77050601, + |
| 1.56e-102 | FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_bbf63064b7103b0a8a3a506f4307cb4b | p@chr1:161188746..161188758, + |
| 1.56e-102 | FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_bbf63064b7103b0a8a3a506f4307cb4b | p@chr1:161188746..161188758, + |
| 4.16e-102 | FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_eafb1bb2214c9b5079ca7dfd8122e873 | p@chr17:7482481..7482508, - |
| 4.16e-102 | FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_eafb1bb2214c9b5079ca7dfd8122e873 | p@chr17:7482481..7482508, - |
| 1.82e-101 | FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_99b731390ab71daa6aed38d768265674 | p5@IFI30 |
| 1.82e-101 | FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_99b731390ab71daa6aed38d768265674 | p5@IFI30 |
| 4.93e-100 | FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_b5a80d0306b792ca6c10e7ab77d5f872 | p@chr4:3387239..3387324, - |
| 4.93e-100 | FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_b5a80d0306b792ca6c10e7ab77d5f872 | p@chr4:3387239..3387324, - |
| 5.08e-99 | FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_efebe6034fed9f05b7a3b2b1f2096618 | p@chr7:2832730..2832791, + |
| 5.08e-99 | FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_efebe6034fed9f05b7a3b2b1f2096618 | p@chr7:2832730..2832791, + |
| 2.26e-98 | FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_2d6bc01cb5d299ab07ccab66fef75bab | p15@MGAT1 |
| 2.26e-98 | FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_2d6bc01cb5d299ab07ccab66fef75bab | p15@MGAT1 |
| 8.47e-98 | FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_b220f11e883621b6370f84b863253af8 | p7@IFI30 |
| 8.47e-98 | FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_b220f11e883621b6370f84b863253af8 | p7@IFI30 |
| 1.3e-97 | FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_adee40317dfa52cb0deb095bba635639 | p8@CHI3L2 |
| 1.3e-97 | FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_adee40317dfa52cb0deb095bba635639 | p8@CHI3L2 |
| 2.53e-97 | FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_d788059806c67df8af9847a7945ddb47 | p1@AK126179 |
| 2.53e-97 | FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_d788059806c67df8af9847a7945ddb47 | p1@AK126179 |
| 1.58e-96 | FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_cdbdf210f1d8853585267caa80a39642 | p@chr2:145429606..145429658, + |
| 1.58e-96 | FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_cdbdf210f1d8853585267caa80a39642 | p@chr2:145429606..145429658, + |
| 5.46e-96 | FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_cb5e15ff3ac4f709b8b85576cfa63b6d | p@chr19:18286116..18286156, + |
| 5.46e-96 | FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_cb5e15ff3ac4f709b8b85576cfa63b6d | p@chr19:18286116..18286156, + |
| 8.18e-96 | FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_b8eaa3a3d6530cf1a0835d3605e037d6 | p2@CD300C |
| 8.18e-96 | FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_b8eaa3a3d6530cf1a0835d3605e037d6 | p2@CD300C |
| 4.86e-95 | FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_1fb6dae9c966d1e97cb4ebf0211fd1bf | p1@CYP1B1-AS1 |
| 4.86e-95 | FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_1fb6dae9c966d1e97cb4ebf0211fd1bf | p1@CYP1B1-AS1 |
| 7.97e-95 | FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_74be294bc5ff26b464e1f9eb9a82e4d7 | p@chr15:65174546..65174583, - |
| 7.97e-95 | FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_74be294bc5ff26b464e1f9eb9a82e4d7 | p@chr15:65174546..65174583, - |
| 1.31e-94 | FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_2d891e7b740d2497a2cda3a8fdc89f0c | p7@FNIP2 |
| 1.31e-94 | FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_2d891e7b740d2497a2cda3a8fdc89f0c | p7@FNIP2 |
| 3.51e-94 | FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_68b0f243f102bf3268e3f9aa322dcbde | p@chr4:185314125..185314143, - |
| 3.51e-94 | FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_68b0f243f102bf3268e3f9aa322dcbde | p@chr4:185314125..185314143, - |
| 5.01e-94 | FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_db82f94b9185a5dff3e174519b1811c2 | p7@RNF13 |
| 5.01e-94 | FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_db82f94b9185a5dff3e174519b1811c2 | p7@RNF13 |
| 1.06e-93 | FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_6645c96deb4574ab2e38356e5ede0416 | p@chr19:52299474..52299504, - |
| 1.06e-93 | FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_6645c96deb4574ab2e38356e5ede0416 | p@chr19:52299474..52299504, - |
| 1.95e-93 | FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_546a0e681fecf3975ff93a3295c6610f | p1@ENST00000425320 |
| 1.95e-93 | FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_546a0e681fecf3975ff93a3295c6610f | p1@ENST00000425320 |
| 2.7e-93 | FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_c0f522368c0d460187d3613731a0f765 | p@chr1:161188686..161188721, + |
| 2.7e-93 | FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_c0f522368c0d460187d3613731a0f765 | p@chr1:161188686..161188721, + |
| 4.24e-93 | FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_cf60058934a60f1e4b32164629410344 | p@chr2:119726719..119726744, + |
| 4.24e-93 | FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_cf60058934a60f1e4b32164629410344 | p@chr2:119726719..119726744, + |
| 6.07e-93 | FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_3f8a7ddd188dd7e4fe1d5a2750f500d3 | p@chr19:18288064..18288080, + |
| 6.07e-93 | FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_3f8a7ddd188dd7e4fe1d5a2750f500d3 | p@chr19:18288064..18288080, + |
| 7.29e-93 | FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_acf7c15fecc1d2f086706db9de6e1008 | p@chr10:73648356..73648408, - |
| 7.29e-93 | FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_acf7c15fecc1d2f086706db9de6e1008 | p@chr10:73648356..73648408, - |
| 9.56e-93 | FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_64d10b3fc0782b7ca51979b5a4235205 | p@chr4:185314151..185314178, - |
| 9.56e-93 | FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_64d10b3fc0782b7ca51979b5a4235205 | p@chr4:185314151..185314178, - |
| 3.92e-92 | FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_2428d4c27d93dc0b8ef1b4a6765028d6 | p@chr4:185314188..185314207, - |
| 3.92e-92 | FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_2428d4c27d93dc0b8ef1b4a6765028d6 | p@chr4:185314188..185314207, - |
| 5.8e-92 | FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_1b10f9a03db1e610e85b412f9352bc03 | p@chrX:153286067..153286101, - |
| 5.8e-92 | FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_1b10f9a03db1e610e85b412f9352bc03 | p@chrX:153286067..153286101, - |
| 7.64e-92 | FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_e52e646674a42a0bb826a4380245a86c | p@chrX:37664331..37664352, + |
| 7.64e-92 | FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_e52e646674a42a0bb826a4380245a86c | p@chrX:37664331..37664352, + |
| 1.15e-91 | FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_8d2c446c94b1649612da35ba8db4f6e2 | p2@ZEB2-AS1 |
| 1.15e-91 | FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_8d2c446c94b1649612da35ba8db4f6e2 | p2@ZEB2-AS1 |
| 1.59e-91 | FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_8366d5dab8d081eb846ce39218c2ba3d | p8@CTSS |
| 1.59e-91 | FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_8366d5dab8d081eb846ce39218c2ba3d | p8@CTSS |
| 1.8e-91 | FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_837b623725d7f8bf720511c9bc8ac986 | p@chr8:116588888..116588904, + |
| 1.8e-91 | FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_837b623725d7f8bf720511c9bc8ac986 | p@chr8:116588888..116588904, + |
| 2.14e-91 | FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_24b3c4b2982cdefb6e768cd7ce457e03 | p4@RNF115 |
| 2.14e-91 | FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_24b3c4b2982cdefb6e768cd7ce457e03 | p4@RNF115 |
| 2.25e-91 | FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_a4fdb2d2100e01f1de8a378cfb6f9aaa | p@chr1:161188826..161188842, + |
| 2.25e-91 | FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_a4fdb2d2100e01f1de8a378cfb6f9aaa | p@chr1:161188826..161188842, + |
| 4.14e-91 | FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_cec7347d09181d7e9a4505077b2f6063 | p@chr2:129283966..129283970, + |
| 4.14e-91 | FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_cec7347d09181d7e9a4505077b2f6063 | p@chr2:129283966..129283970, + |
| 8.75e-91 | FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_0b66c350d5000de22333a848616fe8df | p@chr1:26602990..26603008, + |
| 8.75e-91 | FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_0b66c350d5000de22333a848616fe8df | p@chr1:26602990..26603008, + |
| 9.66e-91 | FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_7a9a09c14ac499ad9975df6b68d11e7d | p@chr19:18285955..18285972, + |
| 9.66e-91 | FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_7a9a09c14ac499ad9975df6b68d11e7d | p@chr19:18285955..18285972, + |
| 1.01e-90 | FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_7a6ba9b19216a6c46573d62a3d5c2234 | p@chr1:108593061..108593077, + |
| 1.01e-90 | FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_7a6ba9b19216a6c46573d62a3d5c2234 | p@chr1:108593061..108593077, + |
| 1.02e-90 | FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_3a44c163ac24435a1bc05286c505ec7b | p5@CU676849, p5@CU689079 |
| 1.02e-90 | FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_3a44c163ac24435a1bc05286c505ec7b | p5@CU676849, p5@CU689079 |
| 2.54e-90 | FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_232d143d11780afb88faedebc31997e1 | p@chr20:1517991..1518011, - |
| 2.54e-90 | FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_232d143d11780afb88faedebc31997e1 | p@chr20:1517991..1518011, - |
| 7.24e-90 | FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_8b9def73dd9026cf1e77bf2c374808ae | p@chr19:18283959..18283993, + |
| 7.24e-90 | FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_8b9def73dd9026cf1e77bf2c374808ae | p@chr19:18283959..18283993, + |
| 1.14e-89 | FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_4162ca8f8b172ee8d736a56a155f03e4 | p6@IFI30 |
| 1.14e-89 | FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_4162ca8f8b172ee8d736a56a155f03e4 | p6@IFI30 |
| 1.43e-89 | FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_71ddaeb8c7744ebcd59dd7801bc98f91 | p12@MGAT1 |
| 1.43e-89 | FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_71ddaeb8c7744ebcd59dd7801bc98f91 | p12@MGAT1 |
| 2.02e-89 | FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_8b5510fddb57233e55508a2f9e767a19 | p4@ST18 |
| 2.02e-89 | FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_8b5510fddb57233e55508a2f9e767a19 | p4@ST18 |
| 2.61e-89 | FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_7e236bbda5fc2773593686cee98c90df | p4@EIF2AK1 |
| 2.61e-89 | FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_7e236bbda5fc2773593686cee98c90df | p4@EIF2AK1 |
| 3.56e-89 | FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_c6f7cae828d5b812d5329355f8b4705f | p@chr17:7483714..7483726, + |
| 3.56e-89 | FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_c6f7cae828d5b812d5329355f8b4705f | p@chr17:7483714..7483726, + |
| 7.55e-89 | FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_d2ddeb97f817110b07d97a5329178559 | p@chr19:51625924..51625942, + |
| 7.55e-89 | FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_d2ddeb97f817110b07d97a5329178559 | p@chr19:51625924..51625942, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Also called osseous tissue, (Latin: os). Is a type of hard endoskeletal connective tissue found in many vertebrate animals. Bone is the main tissue of body organs that support body structures, protect internal organs, (in conjunction with muscles) facilitate movement; and are involved with cell formation, calcium metabolism, and mineral storage.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal element that is composed of bone tissue.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
