FFCP PHASE1:Mm9::chrX:136145135..136145139,+: Difference between revisions
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{{FFCP|EntrezGene=66889|HGNC=|MCL_coexpression_id=24|UniProt=Q9D304,B1AVW8|association_with_transcript=-19bp_to_ENSMUST00000113026,NM_023270,uc009uki.2_5end|description=CAGE_peak_3_at_Rnf128_5end|id=chrX:136145135..136145139,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000239,9.54e-10,6;CL:0000677,9.54e-10,6;CL:0000584,9.54e-10,6;CL:0000066,9.77e-09,25;CL:0002563,1.47e-08,9;CL:0002251,1.47e-08,9;CL:0000075,2.79e-08,7;CL:0000682,8.24e-08,3;CL:0000349,5.86e-07,3;CL:0000351,5.86e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!7.56e-11!15;UBERON:0000160!8.87e-11!43;UBERON:0001242!2.32e-09!13;UBERON:0000060!2.32e-09!13;UBERON:0001262!2.32e-09!13;UBERON:0004786!2.32e-09!13;UBERON:0004923!1.86e-08!24;UBERON:0005409!1.51e-07!59|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.52e-19,15;UBERON:0000160,4.40e-18,31;UBERON:0001242,1.34e-15,13;UBERON:0001262,1.34e-15,13;UBERON:0004786,1.34e-15,13;UBERON:0004923,1.37e-15,24;UBERON:0005409,2.04e-10,47;UBERON:0002108,7.87e-09,4;UBERON:0003350,1.47e-08,9;UBERON:0004808,1.47e-08,9;UBERON:0001277,1.47e-08,9;UBERON:0000331,2.46e-07,3;UBERON:0002116,2.46e-07,3;UBERON:0001204,2.46e-07,3;UBERON:0001168,2.46e-07,3;UBERON:0000358,5.86e-07,3;UBERON:0000307,5.86e-07,3;UBERON:0007010,5.86e-07,3;UBERON:0004119,7.28e-07,118;UBERON:0000925,7.28e-07,118;UBERON:0006595,7.28e-07,118;UBERON:0000485,7.52e-07,11|phase1_expression=0.160148847104794,2.44282785347553,5.0049916332849,3.0246421130683,5.50985302940982,1.6787927191189,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,2.87986361028132,2.98232065387321,4.01962374880514,4.30761996159075,2.15471232685889,2.47030445293286,2.77233142735924,1.99557459589774,0,0,0,1.1554064790051,0.664938581433969,0.612508068787107,0,0,0,0,0,0.485510353031154,0,0,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0,1.03134418455488,0,0,0,0,0,0,0,0,0.299600110518405,0,0,0,0,0.285650984403804,0.220868540951614,0,0,0,0,0.638436690425939,0.614426133024974,0,0,0,0,1.12552522006336,0.45839474333043,0,0.427115042397309,0.186399445825301,0.075726193333184,0,0.579728977403356,0.860423876981386,2.03991400112325,0,1.94932925234301,0,0.561777680527007,0,0,0,0.704217098883403,0,0,0,0.432982082022428,0.506719730950197,0,0.79928715803342,0,0.445326417194474,0.173485326766136,0,0.691846491768175,0.753613202763113,0.587943535678524,0.502666365318702,2.22475470960936,0,0,0,0,0,1.86391761218122,0.585561594023094,0,1.02182822083437,0,0,0.127070227073065,0.898743836428936,0.457500602818626,0,0.695297280769106,0.511430914660661,0.41557608911912,1.78465389374533,0.101839363850316,0.248813941220186,0.252722758433675,0.631325567659422,0,0,0,0,0,0,0,0,0,0,0.175951124163949,0,0,0,0.205782136407943,0.398068533636986,0,0,0,0,0,0.180062061461015,0.473489471170421,0.196764231747404,0.462801338662135,0.465067889500816,0.804820204198858,0.233530684734339,0.658239399653922,0.164167464079095,0.162137619091711,0.438599962275997,0.658650345873152,0.939444931322602,0,0,2.31293148088659,0,0.426576501070468,0.232236671860439,0.38660238396628,0.201683524623343,0.889512175379481,0.951128130562796,0,1.31759163779209,1.50801125280162,1.1937388322469,0.58489226135736,0,2.80979464837102,1.59313018603494,0.189667900953082,0.114248512609729,0,0,0.387904974335251,0.140271639780637,0.632365371242573,0.295220295959204,0.627994911365499,0.740382983530803,1.1858105083486,0.500535317148282,0,0.224862112384854,0.811440485554012,1.20588579876208,0.50925170356284,0.287696137450811,0.324270453550071,0.549122826376163,0,0.744281895337007,1.5601883655728,0.757736633841335,0.179397413521912,0.482443521363367,0,0,0.325929952884052,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,0,0.983528546038072,0.551873492609465,0.160550589987792,1.05490517932983,0,0,0,0,0,0,0,0,0.809621403349789,0,0,0.642642632843614,0.567760340833074,0.178065603667255,0.162886959353576,0,1.32745138339963,0,0,0.377210159511796,0,0.307435147943927,0.775284879504663,0.363533729477506,0.712994756769443,0,1.05418608574999,0,1.02131881726136,0.18006109403131,0,0,0,0,0,0,0.704015124191131,3.81297727554876,0,0,0,0,0,0,1.1659233465194,0.741701208042039,0,0,0.185194527369712,0,0.27338845544205,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,0,0.134864346384821,0.0826534557253359,0.523511883968059,0.777689839750757,2.4853572523477,0,0.299033092087958,0,0,0,0,0.117357238645754,0.2604087696879,0.209718688851422,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0.179026695667481,0.39736270956253,0.120195449519969,0.147689527174577,0.100966449948148,0,0,0,0,0,0.906921534460845,1.10992976687032,2.24284641523689,2.85403847818933,0.579568782096571,0.563047426353546,0.549454872801795,0,0.501572104035363,0,0.920650473014354,0,0.171853182343688,2.05524755931193,0,0,0,0.453142408984205,0,0,0.399024873401031,0,0.243106717068294,0,0.183843508450014,0.44449345560323,0.412070114477788,0.320919209591815,0,0,0,0.37456602987953,0.320125762024346,0.287177344778066,0.952587382566147,0,0,0,0,0,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.507687647350059,0.365855945745545,0,0,0,0.118635018124174,0.394017929502254,0,0.309873682371932,0.385813221962283,0.249810577937946,0.467863216890817,0,0.191288332068843,0.220591419119515,0|short_description=p3@Rnf128}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:66889 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9D304,uniprot:B1AVW8 | |||
|association_with_transcript=-19bp_to_ENSMUST00000113026,NM_023270,uc009uki.2_5end | |||
|cluster_id=chrX:136145135..136145139,+ | |||
|description=CAGE_peak_3_at_Rnf128_5end | |||
|id=chrX:136145135..136145139,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,9.54e-10,6;CL:0000677,9.54e-10,6;CL:0000584,9.54e-10,6;CL:0000066,9.77e-09,25;CL:0002563,1.47e-08,9;CL:0002251,1.47e-08,9;CL:0000075,2.79e-08,7;CL:0000682,8.24e-08,3;CL:0000349,5.86e-07,3;CL:0000351,5.86e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!7.56e-11!15;UBERON:0000160!8.87e-11!43;UBERON:0001242!2.32e-09!13;UBERON:0000060!2.32e-09!13;UBERON:0001262!2.32e-09!13;UBERON:0004786!2.32e-09!13;UBERON:0004923!1.86e-08!24;UBERON:0005409!1.51e-07!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.52e-19,15;UBERON:0000160,4.40e-18,31;UBERON:0001242,1.34e-15,13;UBERON:0001262,1.34e-15,13;UBERON:0004786,1.34e-15,13;UBERON:0004923,1.37e-15,24;UBERON:0005409,2.04e-10,47;UBERON:0002108,7.87e-09,4;UBERON:0003350,1.47e-08,9;UBERON:0004808,1.47e-08,9;UBERON:0001277,1.47e-08,9;UBERON:0000331,2.46e-07,3;UBERON:0002116,2.46e-07,3;UBERON:0001204,2.46e-07,3;UBERON:0001168,2.46e-07,3;UBERON:0000358,5.86e-07,3;UBERON:0000307,5.86e-07,3;UBERON:0007010,5.86e-07,3;UBERON:0004119,7.28e-07,118;UBERON:0000925,7.28e-07,118;UBERON:0006595,7.28e-07,118;UBERON:0000485,7.52e-07,11 | |||
|phase1_expression=0.160148847104794,2.44282785347553,5.0049916332849,3.0246421130683,5.50985302940982,1.6787927191189,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,2.87986361028132,2.98232065387321,4.01962374880514,4.30761996159075,2.15471232685889,2.47030445293286,2.77233142735924,1.99557459589774,0,0,0,1.1554064790051,0.664938581433969,0.612508068787107,0,0,0,0,0,0.485510353031154,0,0,0,0,0.218025156380447,0,0,0,1.43752564364972,0,0,0,0,0,1.03134418455488,0,0,0,0,0,0,0,0,0.299600110518405,0,0,0,0,0.285650984403804,0.220868540951614,0,0,0,0,0.638436690425939,0.614426133024974,0,0,0,0,1.12552522006336,0.45839474333043,0,0.427115042397309,0.186399445825301,0.075726193333184,0,0.579728977403356,0.860423876981386,2.03991400112325,0,1.94932925234301,0,0.561777680527007,0,0,0,0.704217098883403,0,0,0,0.432982082022428,0.506719730950197,0,0.79928715803342,0,0.445326417194474,0.173485326766136,0,0.691846491768175,0.753613202763113,0.587943535678524,0.502666365318702,2.22475470960936,0,0,0,0,0,1.86391761218122,0.585561594023094,0,1.02182822083437,0,0,0.127070227073065,0.898743836428936,0.457500602818626,0,0.695297280769106,0.511430914660661,0.41557608911912,1.78465389374533,0.101839363850316,0.248813941220186,0.252722758433675,0.631325567659422,0,0,0,0,0,0,0,0,0,0,0.175951124163949,0,0,0,0.205782136407943,0.398068533636986,0,0,0,0,0,0.180062061461015,0.473489471170421,0.196764231747404,0.462801338662135,0.465067889500816,0.804820204198858,0.233530684734339,0.658239399653922,0.164167464079095,0.162137619091711,0.438599962275997,0.658650345873152,0.939444931322602,0,0,2.31293148088659,0,0.426576501070468,0.232236671860439,0.38660238396628,0.201683524623343,0.889512175379481,0.951128130562796,0,1.31759163779209,1.50801125280162,1.1937388322469,0.58489226135736,0,2.80979464837102,1.59313018603494,0.189667900953082,0.114248512609729,0,0,0.387904974335251,0.140271639780637,0.632365371242573,0.295220295959204,0.627994911365499,0.740382983530803,1.1858105083486,0.500535317148282,0,0.224862112384854,0.811440485554012,1.20588579876208,0.50925170356284,0.287696137450811,0.324270453550071,0.549122826376163,0,0.744281895337007,1.5601883655728,0.757736633841335,0.179397413521912,0.482443521363367,0,0,0.325929952884052,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,0,0.983528546038072,0.551873492609465,0.160550589987792,1.05490517932983,0,0,0,0,0,0,0,0,0.809621403349789,0,0,0.642642632843614,0.567760340833074,0.178065603667255,0.162886959353576,0,1.32745138339963,0,0,0.377210159511796,0,0.307435147943927,0.775284879504663,0.363533729477506,0.712994756769443,0,1.05418608574999,0,1.02131881726136,0.18006109403131,0,0,0,0,0,0,0.704015124191131,3.81297727554876,0,0,0,0,0,0,1.1659233465194,0.741701208042039,0,0,0.185194527369712,0,0.27338845544205,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,0,0.134864346384821,0.0826534557253359,0.523511883968059,0.777689839750757,2.4853572523477,0,0.299033092087958,0,0,0,0,0.117357238645754,0.2604087696879,0.209718688851422,0.241584120826006,0,0,0.202725215290164,0.102710957164827,0,0.179026695667481,0.39736270956253,0.120195449519969,0.147689527174577,0.100966449948148,0,0,0,0,0,0.906921534460845,1.10992976687032,2.24284641523689,2.85403847818933,0.579568782096571,0.563047426353546,0.549454872801795,0,0.501572104035363,0,0.920650473014354,0,0.171853182343688,2.05524755931193,0,0,0,0.453142408984205,0,0,0.399024873401031,0,0.243106717068294,0,0.183843508450014,0.44449345560323,0.412070114477788,0.320919209591815,0,0,0,0.37456602987953,0.320125762024346,0.287177344778066,0.952587382566147,0,0,0,0,0,0.177475806159338,0.238436189947321,0,0.0941093804153306,0.507687647350059,0.365855945745545,0,0,0,0.118635018124174,0.394017929502254,0,0.309873682371932,0.385813221962283,0.249810577937946,0.467863216890817,0,0.191288332068843,0.220591419119515,0 | |||
|short_description=p3@Rnf128 | |||
}} |
Revision as of 00:57, 6 August 2015
Short description: | p3@Rnf128 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rnf128_5end |
Coexpression cluster: | MCL_coexpression_mm9:24 |
Association with transcript: | -19bp_to_ENSMUST00000113026, NM_023270, uc009uki.2_5end |
EntrezGene: | 66889 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 9.54e-10 | 6 |
gut absorptive cell | 9.54e-10 | 6 |
enterocyte | 9.54e-10 | 6 |
epithelial cell | 9.77e-09 | 25 |
intestinal epithelial cell | 1.47e-08 | 9 |
epithelial cell of alimentary canal | 1.47e-08 | 9 |
columnar/cuboidal epithelial cell | 2.79e-08 | 7 |
M cell of gut | 8.24e-08 | 3 |
extraembryonic cell | 5.86e-07 | 3 |
trophoblast cell | 5.86e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.52e-19 | 15 |
intestine | 4.40e-18 | 31 |
intestinal mucosa | 1.34e-15 | 13 |
wall of intestine | 1.34e-15 | 13 |
gastrointestinal system mucosa | 1.34e-15 | 13 |
organ component layer | 1.37e-15 | 24 |
gastrointestinal system | 2.04e-10 | 47 |
small intestine | 7.87e-09 | 4 |
epithelium of mucosa | 1.47e-08 | 9 |
gastrointestinal system epithelium | 1.47e-08 | 9 |
intestinal epithelium | 1.47e-08 | 9 |
ileal mucosa | 2.46e-07 | 3 |
ileum | 2.46e-07 | 3 |
mucosa of small intestine | 2.46e-07 | 3 |
wall of small intestine | 2.46e-07 | 3 |
blastocyst | 5.86e-07 | 3 |
blastula | 5.86e-07 | 3 |
cleaving embryo | 5.86e-07 | 3 |
endoderm-derived structure | 7.28e-07 | 118 |
endoderm | 7.28e-07 | 118 |
presumptive endoderm | 7.28e-07 | 118 |
simple columnar epithelium | 7.52e-07 | 11 |