FFCP PHASE1:Hg19::chr17:48277566..48277608,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=2197 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 01:32, 16 September 2015
| Short description: | p5@COL1A1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_COL1A1_5end |
| Coexpression cluster: | C3132_Pericytes_Mesenchymal_Skeletal_skeletal_amniotic_Hair_gastric |
| Association with transcript: | -14bp_to_ENST00000507689_5end |
| EntrezGene: | COL1A1 |
| HGNC: | 2197 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@COL1A1 |
|---|
0
100
200
300
400
500
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 4.91e-15 | 76 |
| muscle precursor cell | 7.14e-13 | 58 |
| myoblast | 7.14e-13 | 58 |
| multi-potent skeletal muscle stem cell | 7.14e-13 | 58 |
| muscle cell | 1.12e-12 | 55 |
| electrically responsive cell | 7.14e-11 | 61 |
| electrically active cell | 7.14e-11 | 61 |
| smooth muscle cell | 4.08e-10 | 43 |
| smooth muscle myoblast | 4.08e-10 | 43 |
| extraembryonic cell | 2.58e-09 | 19 |
Showing 1 to 10 of 14 entries
| Ontology term | p-value | n |
|---|---|---|
| mesenchyme | 1.23e-12 | 160 |
| entire embryonic mesenchyme | 1.23e-12 | 160 |
| skeletal muscle tissue | 1.31e-12 | 62 |
| striated muscle tissue | 1.31e-12 | 62 |
| myotome | 1.31e-12 | 62 |
| muscle tissue | 7.40e-12 | 64 |
| musculature | 7.40e-12 | 64 |
| musculature of body | 7.40e-12 | 64 |
| trunk mesenchyme | 4.89e-11 | 122 |
| epithelial vesicle | 1.34e-10 | 78 |
Showing 1 to 10 of 22 entries
