FFCP PHASE2:Hg19::chr3:193853927..193853944,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:3280 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:5192 |TSSclass...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=3280 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=5192 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q14469 | ||
|association_with_transcript=0bp_to_ENST00000232424,ENST00000476918,NM_005524,uc003ftq.1,uc011bst.1_5end | |association_with_transcript=0bp_to_ENST00000232424,ENST00000476918,NM_005524,uc003ftq.1,uc011bst.1_5end | ||
|cluster_id=chr3:193853927..193853944,+ | |cluster_id=chr3:193853927..193853944,+ |
Latest revision as of 12:08, 17 September 2015
Short description: | p1@HES1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HES1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000232424, ENST00000476918, NM_005524, uc003ftq.1, uc011bst.1_5end |
EntrezGene: | HES1 |
HGNC: | 5192 |
UniProt: | Q14469 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p1@HES1 |
---|
0
200
400
600
800
1000
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.25e-23 | 253 |
endodermal cell | 4.66e-15 | 58 |
endo-epithelial cell | 3.01e-11 | 42 |
classical monocyte | 1.17e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.17e-07 | 42 |
Showing 1 to 5 of 5 entries
Ontology term | p-value | n |
---|---|---|
embryo | 1.41e-11 | 592 |
developing anatomical structure | 5.52e-10 | 581 |
trunk region element | 1.73e-09 | 101 |
subdivision of digestive tract | 2.95e-08 | 118 |
embryonic structure | 4.19e-08 | 564 |
primordium | 7.35e-08 | 160 |
germ layer | 1.05e-07 | 560 |
germ layer / neural crest | 1.05e-07 | 560 |
embryonic tissue | 1.05e-07 | 560 |
presumptive structure | 1.05e-07 | 560 |
Showing 1 to 10 of 23 entries
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.85e-14 | 106 |
cell type cancer | 1.77e-13 | 143 |
squamous cell carcinoma | 4.56e-08 | 14 |
Showing 1 to 3 of 3 entries