FFCP PHASE2:Hg19::chr7:27190547..27190591,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:3203 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:5107 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=3203 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=5107 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 01:35, 18 September 2015
| Short description: | p1@HOXA6 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_HOXA6_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -325bp_to_ENST00000521478_5end |
| EntrezGene: | HOXA6 |
| HGNC: | 5107 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@HOXA6 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
17.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| cavitated compound organ | 1.92e-08 | 31 |
| renal system | 3.39e-07 | 48 |
| trunk region element | 4.60e-07 | 101 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| cancer | 1.06e-26 | 235 |
| disease of cellular proliferation | 1.74e-25 | 239 |
| cell type cancer | 3.20e-20 | 143 |
| carcinoma | 1.01e-16 | 106 |
| organ system cancer | 5.78e-13 | 137 |
| lung carcinoma | 4.24e-08 | 9 |
| disease of anatomical entity | 4.42e-08 | 39 |
| respiratory system cancer | 9.39e-08 | 16 |
| lung cancer | 8.80e-07 | 15 |
Showing 1 to 9 of 9 entries
