Personal tools

MCL coexpression mm9:3008

From FANTOM5_SSTAR

Revision as of 19:23, 11 October 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr15:79722745..79722779,-p@chr15:79722745..79722779
-
Mm9::chr15:79722783..79722794,-p@chr15:79722783..79722794
-
Mm9::chr15:79736270..79736276,+p@chr15:79736270..79736276
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
foregut3.85e-1180
anatomical space1.37e-1057
mixed endoderm/mesoderm-derived structure2.80e-1035
respiratory system2.17e-0942
immaterial anatomical entity5.25e-0979
hematopoietic system5.64e-0945
blood island5.64e-0945
respiratory tract6.62e-0941
hemopoietic organ1.69e-0829
immune organ1.69e-0829
subdivision of digestive tract2.52e-08114
hemolymphoid system2.80e-0848
immune system2.80e-0848
mesoderm4.15e-08120
mesoderm-derived structure4.15e-08120
presumptive mesoderm4.15e-08120
anatomical cavity6.88e-0839
organism subdivision8.95e-08150
endoderm-derived structure1.15e-07118
endoderm1.15e-07118
presumptive endoderm1.15e-07118
trunk region element1.30e-0779
digestive system1.37e-07116
digestive tract1.37e-07116
primitive gut1.37e-07116
body cavity precursor1.98e-0738
body cavity6.64e-0737
body cavity or lining6.64e-0737
primordium7.18e-07134
lateral plate mesoderm9.29e-0787


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}