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UBERON:0000479

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Name:tissue
Definition:"Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, FMA:9637]
Xrefs:
links:

AAO:0000607
AAO:0010054
AEO:0000043
BILA:0000043
CARO:0000043
EHDAA2:0003043
FBbt:00007003
FMA:9637
galen:Tissue
HAO:0000043
MA:0003002
MESH:A.10
ncithesaurus:Tissue
NIF_GrossAnatomy:birnlex_19
TAO:0001477
TGMA:0001844
WBbt:0005729
XAO:0003040

ZFA:0001477
Synonyms: "portion of tissue" EXACT [CARO:0000043]
"simple tissue" EXACT [AEO:0000043]
"tissue portion" EXACT []
Comments:This class was sourced from CARO, which was initially sourced from FMA. Nomenclature changes have been made. Note also AEO introduces a class AEO:0000013 'single-cell tissue'
Alt_id: UBERON:CARO_0000043-FBbt_00007003-XAO_0003040-ZFA_0001477
Subset: upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0010000(multicellular anatomical structure)
part_of:UBERON:0000468(multi-cellular organism)



Children

is a:UBERON:0000119 (cell layer),UBERON:0000412 (dermal papilla),UBERON:0001744 (lymphoid tissue),UBERON:0001758 (periodontium),UBERON:0002384 (connective tissue),UBERON:0002385 (muscle tissue),UBERON:0003091 (thyroid primordium),UBERON:0003104 (mesenchyme),UBERON:0003714 (neural tissue),UBERON:0004128 (optic vesicle),UBERON:0005291 (embryonic tissue),UBERON:0005292 (extraembryonic tissue),UBERON:0005388 (photoreceptor array),UBERON:0005426 (lens vesicle),UBERON:0005427 (corneal primordium),UBERON:0005497 (non-neural ectoderm),UBERON:0005932 (bulb of hair follicle),UBERON:0005933 (hair root sheath),UBERON:0005969 (reticulum trabeculare),UBERON:0007475 (matrix-based tissue),UBERON:0010536 (nephron progenitor),UBERON:0012429 (hemopoietic tissue),FF:10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
derives from:FF:0000004 (tissue sample),FF:0000317 (mouse pregnant tissue sample),FF:0000998 (adult tissue sample),FF:0000999 (fetal tissue sample)
part of:FF:0000004 (tissue sample),FF:0000317 (mouse pregnant tissue sample),CL:0000864 (tissue-resident macrophage),FF:0000998 (adult tissue sample),FF:0000999 (fetal tissue sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results Mouse (Mus musculus)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000479 (tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data