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MCL coexpression mm9:1553

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:116704833..116704883,+p1@1110005A03Rik
Mm9::chr14:21208135..21208149,-p2@Dnajc9
Mm9::chr9:79641328..79641348,-p2@Tmem30a
Mm9::chr9:79641352..79641378,-p4@Tmem30a
Mm9::chrX:45866695..45866742,-p2@Aifm1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004174electron-transferring-flavoprotein dehydrogenase activity0.0203785365697633
GO:0016649oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor0.0203785365697633
GO:0006309DNA fragmentation during apoptosis0.0344301086670188
GO:0006921cell structure disassembly during apoptosis0.0344301086670188
GO:0030262apoptotic nuclear changes0.0344301086670188
GO:0005758mitochondrial intermembrane space0.0344301086670188
GO:0006308DNA catabolic process0.0344301086670188
GO:0005741mitochondrial outer membrane0.0344301086670188
GO:0008637apoptotic mitochondrial changes0.0344301086670188
GO:0016645oxidoreductase activity, acting on the CH-NH group of donors0.0344301086670188
GO:0031970organelle envelope lumen0.0344301086670188
GO:0031968organelle outer membrane0.0344301086670188
GO:0022411cellular component disassembly0.0344301086670188
GO:0006997nuclear organization and biogenesis0.037771268991134



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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