Personal tools

MCL coexpression mm9:3412

From FANTOM5_SSTAR

Revision as of 20:01, 11 October 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr3:60276705..60276708,+p35@Mbnl1
Mm9::chr3:60276714..60276728,+p16@Mbnl1
Mm9::chr3:60276729..60276738,+p19@Mbnl1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
hemolymphoid system4.67e-1748
immune system4.67e-1748
hematopoietic system8.30e-1645
blood island8.30e-1645
hemopoietic organ3.78e-1029
immune organ3.78e-1029
foregut3.90e-0980
mixed endoderm/mesoderm-derived structure1.59e-0835
lateral plate mesoderm2.01e-0787
gland of gut2.12e-0724
pharynx3.21e-0724
upper respiratory tract3.21e-0724
chordate pharynx3.21e-0724
pharyngeal arch system3.21e-0724
pharyngeal region of foregut3.21e-0724
bone element7.12e-0722
skeletal element7.12e-0722
skeletal system7.12e-0722
thymus7.99e-0723
neck7.99e-0723
respiratory system epithelium7.99e-0723
hemolymphoid system gland7.99e-0723
pharyngeal epithelium7.99e-0723
thymic region7.99e-0723
pharyngeal gland7.99e-0723
entire pharyngeal arch endoderm7.99e-0723
thymus primordium7.99e-0723
early pharyngeal endoderm7.99e-0723


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}