FFCP PHASE1:Hg19::chr14:22433639..22433648,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr14:22433639..22433648,+
|short_description=p2@TRAV12-3
|description=CAGE_peak_2_at_TRAV12-3_5end
|association_with_transcript=-31bp_to_ENST00000390442_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12107 | |HGNC=12107 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-31bp_to_ENST00000390442_5end | |||
|cluster_id=chr14:22433639..22433648,+ | |||
|coexpression_cluster_id=C141 | |||
|description=CAGE_peak_2_at_TRAV12-3_5end | |||
|id=chr14:22433639..22433648,+ | |||
|ontology_enrichment_celltype=CL:0000791!6.54e-46!18;CL:0000789!6.54e-46!18;CL:0002420!6.54e-46!18;CL:0002419!6.54e-46!18;CL:0000790!6.54e-46!18;CL:0000084!7.68e-36!25;CL:0000827!7.68e-36!25;CL:0000625!3.35e-30!11;CL:0000624!2.66e-20!6;CL:0000838!6.45e-19!52;CL:0000542!1.81e-18!53;CL:0000051!1.81e-18!53;CL:0000898!1.65e-11!3;CL:0000738!1.31e-09!140;CL:0002087!4.31e-09!119;CL:0000815!3.44e-08!2;CL:0000792!3.44e-08!2;CL:0002677!3.44e-08!2;CL:0002031!9.01e-07!124;CL:0000037!9.74e-07!172;CL:0000566!9.74e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.27e-29;18!CL:0000789;1.27e-29;18!CL:0002419;1.27e-29;18!CL:0000625;1.08e-27;11!CL:0000084;4.54e-21;25!CL:0000898;1.22e-12;3!CL:0000895;6.61e-10;1!CL:0000624;9.55e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.14e-29,18;CL:0000789,1.14e-29,18;CL:0002420,1.14e-29,18;CL:0002419,1.14e-29,18;CL:0000790,1.14e-29,18;CL:0000625,1.06e-27,11;CL:0000084,4.20e-21,25;CL:0000827,4.20e-21,25;CL:0000898,1.05e-12,3;CL:0000810,4.44e-10,1;CL:0000895,4.44e-10,1;CL:0002436,4.44e-10,1;CL:0002427,4.44e-10,1;CL:0002428,4.44e-10,1;CL:0002429,4.44e-10,1;CL:0002433,4.44e-10,1;CL:0002431,4.44e-10,1;CL:0002432,4.44e-10,1;CL:0000838,1.25e-09,52;CL:0000542,1.98e-09,53;CL:0000051,1.98e-09,53;CL:0000624,8.89e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;1.27e-29;18!CL:0002427;6.61e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!9.15e-12!7;UBERON:0002370!2.44e-08!4;UBERON:0005058!2.44e-08!4;UBERON:0009113!2.44e-08!4;UBERON:0003295!2.44e-08!4;UBERON:0005562!2.44e-08!4 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p2@TRAV12-3 | |||
}} | }} |
Latest revision as of 04:16, 19 September 2015
Short description: | p2@TRAV12-3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRAV12-3_5end |
Coexpression cluster: | C141_Hodgkin_acute_thymus_chronic_vein_CD4_B |
Association with transcript: | -31bp_to_ENST00000390442_5end |
EntrezGene: | NA |
HGNC: | 12107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.14e-29 | 18 |
alpha-beta T cell | 1.14e-29 | 18 |
immature T cell | 1.14e-29 | 18 |
mature T cell | 1.14e-29 | 18 |
immature alpha-beta T cell | 1.14e-29 | 18 |
CD8-positive, alpha-beta T cell | 1.06e-27 | 11 |
T cell | 4.20e-21 | 25 |
pro-T cell | 4.20e-21 | 25 |
naive T cell | 1.05e-12 | 3 |
CD4-positive, alpha-beta thymocyte | 4.44e-10 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 4.44e-10 | 1 |
mature CD4 single-positive thymocyte | 4.44e-10 | 1 |
resting double-positive thymocyte | 4.44e-10 | 1 |
double-positive blast | 4.44e-10 | 1 |
CD69-positive double-positive thymocyte | 4.44e-10 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 4.44e-10 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 4.44e-10 | 1 |
CD24-positive, CD4 single-positive thymocyte | 4.44e-10 | 1 |
lymphoid lineage restricted progenitor cell | 1.25e-09 | 52 |
lymphocyte | 1.98e-09 | 53 |
common lymphoid progenitor | 1.98e-09 | 53 |
CD4-positive, alpha-beta T cell | 8.89e-07 | 6 |