FFCP PHASE1:Hg19::chr19:1568124..1568142,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=399664|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16734|TSSclassifier=S|UniProt=E9PAL6,Q86XN8|association_with_transcript=-67bp_to_ENST00000388824,ENST00000402693,NM_001174118,NM_203304,uc010dsn.2_5end|description=CAGE_peak_5_at_MEX3D_5end|id=chr19:1568124..1568142,-|ontology_enrichment_celltype=CL:0000220!6.97e-17!246;CL:0002321!9.17e-17!248;CL:0000222!2.94e-12!119;CL:0002078!2.98e-11!44;CL:0000115!8.43e-11!35;CL:0002139!4.87e-09!24;CL:0000071!2.28e-08!18;CL:0002546!2.28e-08!18;CL:0000213!2.86e-07!57;CL:0000215!2.86e-07!57;CL:0000066!4.09e-07!254|ontology_enrichment_celltype_v019=CL:0002262;6.65e-13;2!CL:1000398;6.65e-13;2!CL:0000115;3.04e-12;36!CL:0000071;4.80e-11;18!CL:0002078;1.47e-10;45!CL:0002541;7.74e-09;3!CL:0000346;1.44e-08;3!CL:1000428;1.44e-08;3!CL:0000632;1.44e-08;3!CL:0002139;3.85e-08;24!CL:0000222;4.83e-07;1!CL:0002252;4.83e-07;1|ontology_enrichment_celltype_v019_2=CL:0000115,1.67e-14,36;CL:0002078,1.07e-13,45;CL:0002262,5.61e-13,2;CL:1000398,5.61e-13,2;CL:0000071,2.79e-11,18;CL:0002546,2.79e-11,18;CL:0000346,1.02e-08,3;CL:1000428,1.02e-08,3;CL:0002541,1.06e-08,3;CL:0000632,2.11e-08,3;CL:0000213,2.53e-08,58;CL:0000215,2.53e-08,58;CL:0002139,2.59e-08,24;CL:0002252,4.57e-07,1|ontology_enrichment_development_v019=CL:0002546;4.80e-11;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3571;4.83e-07;1|ontology_enrichment_disease_v019_2=DOID:3571,7.29e-07,1|ontology_enrichment_uberon=UBERON:0003914!1.68e-10!118;UBERON:0000490!6.02e-10!138;UBERON:0005256!1.11e-09!143;UBERON:0000119!5.12e-09!312;UBERON:0000483!8.32e-09!309;UBERON:0001986!2.28e-08!18;UBERON:0004638!2.28e-08!18;UBERON:0004852!2.28e-08!18;UBERON:0002049!4.65e-08!79;UBERON:0007798!4.65e-08!79;UBERON:0004872!6.91e-08!84;UBERON:0000487!1.03e-07!22;UBERON:0000477!1.29e-07!286;UBERON:0006914!1.44e-07!25;UBERON:0000468!4.13e-07!659;UBERON:0000055!5.67e-07!69;UBERON:0001981!5.75e-07!60;UBERON:0007500!5.75e-07!60;UBERON:0004537!5.75e-07!60;UBERON:0006965!5.75e-07!60;UBERON:0000467!5.93e-07!625;UBERON:0000353!5.95e-07!17;UBERON:0004111!6.30e-07!241;UBERON:0000480!7.68e-07!626|ontology_enrichment_uberon_v019=UBERON:0001281;6.65e-13;2!UBERON:0003497;6.65e-13;2!UBERON:0003909;6.65e-13;2!UBERON:0003835;6.65e-13;2!UBERON:0004638;4.80e-11;18!UBERON:0001986;4.80e-11;18!UBERON:0004852;4.80e-11;18!UBERON:0000353;1.70e-09;15!UBERON:0000487;6.20e-09;22!UBERON:0001280;6.89e-09;3!UBERON:0004647;6.89e-09;3!UBERON:0003124;7.74e-09;3!UBERON:0000920;7.74e-09;3!UBERON:0000412;1.44e-08;3!UBERON:0001992;1.44e-08;3!UBERON:0003513;4.30e-08;7!UBERON:0006914;8.58e-08;25!UBERON:0007195;4.83e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001281,5.61e-13,2;UBERON:0003497,5.61e-13,2;UBERON:0003909,5.61e-13,2;UBERON:0003835,5.61e-13,2;UBERON:0004638,2.79e-11,18;UBERON:0001986,2.79e-11,18;UBERON:0004852,2.79e-11,18;UBERON:0000353,1.30e-09,15;UBERON:0003914,2.75e-09,117;UBERON:0000487,4.01e-09,22;UBERON:0001280,6.16e-09,3;UBERON:0004647,6.16e-09,3;UBERON:0005171,6.16e-09,3;UBERON:0000412,1.02e-08,3;UBERON:0001992,1.02e-08,3;UBERON:0000920,1.06e-08,3;UBERON:0007500,4.45e-08,59;UBERON:0001981,4.45e-08,59;UBERON:0004537,4.45e-08,59;UBERON:0006965,4.45e-08,59;UBERON:0003513,5.12e-08,7;UBERON:0006914,5.88e-08,25;UBERON:0007195,6.88e-07,1;UBERON:0000055,8.81e-07,68|phase1_expression=0.726713517082227,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.655324116390517,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0,0,0.492484232307152,0.816002764977012,0.313454721478088,0,0.273748850145768,0.627713197974014,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0.383587685530591,0,0,0.579386075843295,0,0,0.0945348171640679,0.443458794925128,0.351339142772504,0.0654895377488563,0,0,0,0,0,0.238490624305342,0,0,0.39752481473341,1.72046919021225,0.347140501607594,0,0.838998872419812,1.37559020970034,1.25396979922086,0.775250277507987,0,0.66944122552934,0.805658634218294,0.760272105718513,3.1728067481262,0,0.81014194788176,0.357198913136319,0,0.563057402416611,1.53316637465883,1.89853131913626,0.366403487860815,0,0,1.3082821564276,0,0.12663051166458,0.264818361626438,0.286836620748814,0,0.560677600142307,0,0.74000264525148,0.311211035399766,0,0.490385709340376,0.302714855289863,0,0,0.312160076830321,0,0,0.117434498643765,0.161872944368132,0,0.408308342509787,0.245668634623536,0.103325781175765,0,0,0,0,0,0.500474079487857,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0.487185025805993,0,0,0.161646056818812,0,0.10075209822764,0.508681776931463,0.57978255948989,0.272746120590835,0.286804595389004,0.121973706129595,0,0.116193942869518,0.414644220061482,0.252320850875628,0,1.56449532329816,1.28648187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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=399664 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16734 | |||
|TSSclassifier=S | |||
|UniProt=E9PAL6,Q86XN8 | |||
|association_with_transcript=-67bp_to_ENST00000388824,ENST00000402693,NM_001174118,NM_203304,uc010dsn.2_5end | |||
|description=CAGE_peak_5_at_MEX3D_5end | |||
|id=chr19:1568124..1568142,- | |||
|ontology_enrichment_celltype=CL:0000220!6.97e-17!246;CL:0002321!9.17e-17!248;CL:0000222!2.94e-12!119;CL:0002078!2.98e-11!44;CL:0000115!8.43e-11!35;CL:0002139!4.87e-09!24;CL:0000071!2.28e-08!18;CL:0002546!2.28e-08!18;CL:0000213!2.86e-07!57;CL:0000215!2.86e-07!57;CL:0000066!4.09e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002262;6.65e-13;2!CL:1000398;6.65e-13;2!CL:0000115;3.04e-12;36!CL:0000071;4.80e-11;18!CL:0002078;1.47e-10;45!CL:0002541;7.74e-09;3!CL:0000346;1.44e-08;3!CL:1000428;1.44e-08;3!CL:0000632;1.44e-08;3!CL:0002139;3.85e-08;24!CL:0000222;4.83e-07;1!CL:0002252;4.83e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.67e-14,36;CL:0002078,1.07e-13,45;CL:0002262,5.61e-13,2;CL:1000398,5.61e-13,2;CL:0000071,2.79e-11,18;CL:0002546,2.79e-11,18;CL:0000346,1.02e-08,3;CL:1000428,1.02e-08,3;CL:0002541,1.06e-08,3;CL:0000632,2.11e-08,3;CL:0000213,2.53e-08,58;CL:0000215,2.53e-08,58;CL:0002139,2.59e-08,24;CL:0002252,4.57e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002546;4.80e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;4.83e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,7.29e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.68e-10!118;UBERON:0000490!6.02e-10!138;UBERON:0005256!1.11e-09!143;UBERON:0000119!5.12e-09!312;UBERON:0000483!8.32e-09!309;UBERON:0001986!2.28e-08!18;UBERON:0004638!2.28e-08!18;UBERON:0004852!2.28e-08!18;UBERON:0002049!4.65e-08!79;UBERON:0007798!4.65e-08!79;UBERON:0004872!6.91e-08!84;UBERON:0000487!1.03e-07!22;UBERON:0000477!1.29e-07!286;UBERON:0006914!1.44e-07!25;UBERON:0000468!4.13e-07!659;UBERON:0000055!5.67e-07!69;UBERON:0001981!5.75e-07!60;UBERON:0007500!5.75e-07!60;UBERON:0004537!5.75e-07!60;UBERON:0006965!5.75e-07!60;UBERON:0000467!5.93e-07!625;UBERON:0000353!5.95e-07!17;UBERON:0004111!6.30e-07!241;UBERON:0000480!7.68e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;6.65e-13;2!UBERON:0003497;6.65e-13;2!UBERON:0003909;6.65e-13;2!UBERON:0003835;6.65e-13;2!UBERON:0004638;4.80e-11;18!UBERON:0001986;4.80e-11;18!UBERON:0004852;4.80e-11;18!UBERON:0000353;1.70e-09;15!UBERON:0000487;6.20e-09;22!UBERON:0001280;6.89e-09;3!UBERON:0004647;6.89e-09;3!UBERON:0003124;7.74e-09;3!UBERON:0000920;7.74e-09;3!UBERON:0000412;1.44e-08;3!UBERON:0001992;1.44e-08;3!UBERON:0003513;4.30e-08;7!UBERON:0006914;8.58e-08;25!UBERON:0007195;4.83e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,5.61e-13,2;UBERON:0003497,5.61e-13,2;UBERON:0003909,5.61e-13,2;UBERON:0003835,5.61e-13,2;UBERON:0004638,2.79e-11,18;UBERON:0001986,2.79e-11,18;UBERON:0004852,2.79e-11,18;UBERON:0000353,1.30e-09,15;UBERON:0003914,2.75e-09,117;UBERON:0000487,4.01e-09,22;UBERON:0001280,6.16e-09,3;UBERON:0004647,6.16e-09,3;UBERON:0005171,6.16e-09,3;UBERON:0000412,1.02e-08,3;UBERON:0001992,1.02e-08,3;UBERON:0000920,1.06e-08,3;UBERON:0007500,4.45e-08,59;UBERON:0001981,4.45e-08,59;UBERON:0004537,4.45e-08,59;UBERON:0006965,4.45e-08,59;UBERON:0003513,5.12e-08,7;UBERON:0006914,5.88e-08,25;UBERON:0007195,6.88e-07,1;UBERON:0000055,8.81e-07,68 | |||
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| |||
|short_description=p5@MEX3D | |||
}} |
Revision as of 19:10, 11 September 2013
Short description: | p5@MEX3D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_MEX3D_5end |
Coexpression cluster: | NA |
Association with transcript: | -67bp_to_ENST00000388824, ENST00000402693, NM_001174118, NM_203304, uc010dsn.2_5end |
EntrezGene: | MEX3D |
HGNC: | 16734 |
UniProt: | E9PAL6Q86XN8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.67e-14 | 36 |
meso-epithelial cell | 1.07e-13 | 45 |
endothelial cell of sinusoid | 5.61e-13 | 2 |
endothelial cell of hepatic sinusoid | 5.61e-13 | 2 |
blood vessel endothelial cell | 2.79e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.79e-11 | 18 |
hair follicle dermal papilla cell | 1.02e-08 | 3 |
stem cell of epidermis | 1.02e-08 | 3 |
chorionic membrane mesenchymal stem cell | 1.06e-08 | 3 |
hepatic stellate cell | 2.11e-08 | 3 |
lining cell | 2.53e-08 | 58 |
barrier cell | 2.53e-08 | 58 |
endothelial cell of vascular tree | 2.59e-08 | 24 |
epithelial cell of esophagus | 4.57e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 5.61e-13 | 2 |
abdomen blood vessel | 5.61e-13 | 2 |
sinusoid | 5.61e-13 | 2 |
abdominal segment blood vessel | 5.61e-13 | 2 |
blood vessel endothelium | 2.79e-11 | 18 |
endothelium | 2.79e-11 | 18 |
cardiovascular system endothelium | 2.79e-11 | 18 |
parenchyma | 1.30e-09 | 15 |
epithelial tube | 2.75e-09 | 117 |
simple squamous epithelium | 4.01e-09 | 22 |
liver parenchyma | 6.16e-09 | 3 |
liver lobule | 6.16e-09 | 3 |
hepatic duct | 6.16e-09 | 3 |
dermal papilla | 1.02e-08 | 3 |
papillary layer of dermis | 1.02e-08 | 3 |
egg chorion | 1.06e-08 | 3 |
epithelial tube open at both ends | 4.45e-08 | 59 |
blood vessel | 4.45e-08 | 59 |
blood vasculature | 4.45e-08 | 59 |
vascular cord | 4.45e-08 | 59 |
trunk blood vessel | 5.12e-08 | 7 |
squamous epithelium | 5.88e-08 | 25 |
stroma of bone marrow | 6.88e-07 | 1 |
vessel | 8.81e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 7.29e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.