FFCP PHASE1:Hg19::chr22:48027489..48027535,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:48027489..48027535,+ to FFCP PHASE1:Hg19::chr22:48027489..48027535,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=37bp_to_uc003bij.2,uc003bik.1_5end | |||
|cluster_id=chr22:48027489..48027535,+ | |||
|description=CAGE_peak_1_at_uc003bij.2_5end,CAGE_peak_1_at_uc003bik.1_5end | |||
|id=chr22:48027489..48027535,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002251;4.00e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,3.57e-07,20;CL:0000223,6.14e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!3.22e-34!239;DOID:162!1.66e-33!235;DOID:0050687!2.20e-32!143;DOID:305!2.07e-24!106;DOID:0050686!3.23e-16!137;DOID:299!6.99e-15!25;DOID:7!5.71e-11!39;DOID:3119!1.04e-08!14;DOID:1325!1.95e-07!7;DOID:3904!1.95e-07!7 | |||
|ontology_enrichment_disease_v019=DOID:299;8.10e-13;25!DOID:3119;1.24e-09;14!DOID:1325;2.15e-09;7!DOID:3904;2.15e-09;7!DOID:0050687;9.10e-09;143!DOID:305;1.08e-08;106!DOID:5409;2.97e-08;4!DOID:0050615;5.66e-08;16!DOID:7;4.95e-07;39!DOID:1749;6.85e-07;14!DOID:1324;8.18e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,4.99e-34,239;DOID:162,5.59e-33,235;DOID:0050687,4.91e-31,143;DOID:305,3.92e-23,106;DOID:0050686,2.82e-16,137;DOID:299,1.06e-12,25;DOID:7,2.50e-10,39;DOID:3119,1.43e-09,14;DOID:1325,2.30e-09,7;DOID:3904,2.30e-09,7;DOID:5409,3.10e-08,4;DOID:0050615,6.70e-08,16;DOID:1749,5.97e-07,14;DOID:1324,9.10e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0001950!1.38e-11!20;UBERON:0002619!3.34e-10!22;UBERON:0000956!1.52e-08!25;UBERON:0000203!1.52e-08!25;UBERON:0000200!2.86e-08!6;UBERON:0001869!7.74e-08!32;UBERON:0001893!3.90e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.70e-13;20!UBERON:0002619;5.28e-12;22!UBERON:0000200;3.11e-10;6!UBERON:0000956;3.31e-10;25!UBERON:0000203;3.31e-10;25!UBERON:0001869;1.84e-07;32!UBERON:0001893;3.47e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.45e-13,20;UBERON:0002619,4.57e-12,22;UBERON:0000200,2.65e-10,6;UBERON:0000956,2.92e-10,25;UBERON:0000203,2.92e-10,25;UBERON:0001869,1.35e-08,32;UBERON:0001893,6.75e-08,34;UBERON:0002791,2.31e-07,32;UBERON:0003528,9.29e-07,34;UBERON:0002020,9.29e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.246301768349837,0.393553906568396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81264159483652,0,0.329250856225877,0,0.703702806881416,0,0,0,0,0,0,0,0,0,3.95102198979638,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47179963489002,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84591752237042,8.33345949197939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84991942105343,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,9.61814965316141,0,0,0,0,1.9488432172667,0,2.43410110628385,0,0,3.36852972734796,0,4.73306034823102,4.56917875537661,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0.102268682502155,9.84678443688556,0,0,0,0,0,0,0,3.87733098438087,0.649376687132959,0,5.20855522170466,3.67331999984022,0,3.98277068999249,3.30529745380596,2.6002644994473,12.7555048099342,3.49925536059905,0,0,0,0,0,0,1.09692698576986,0.544692317594951,2.78847488557207,0,2.05095700524602,0.46112780877612,1.79515288819544,0.977826347298073,1.5950057986596,0,0.533034776018635,0,0,0,3.15833924864053,2.35275041181287,2.3495022176618,2.27704479269022,0,3.16497096792041,0.163232808159148,2.40300221437699,3.67860687561555,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0.063186579628488,0,0,0,0,0,0,2.27687636823834,2.77349346026277,0,1.46988596121566,0,0,0,0,0,0,0,0,0,4.24829966404928,2.98071917554485,3.79864775735272,4.30213042016567,3.68730573157055,0,3.79638258206047,3.16998917739033,3.09248809647972,0.171594997861965,0,0,0,0.951329442515298,1.67364554099733,1.73396969981747,5.49006120812886,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,0,0,0.0674035438541849,4.4292366681637,1.86281330544726,0,0,0,0,0,0.2249738915515,3.86900977278975,2.06548492637284,2.0126081255956,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0.246277562248017,0,4.53248366080503,0,0,0,0,0,2.11444506695002,0,0,0,0,8.10207690781571,0,2.55336503108073,0,0,0,0,3.45519011750515,4.43034089983493,1.95242023843141,3.755727921195,0,0,0,0,2.62458856720424,3.4879297034579,6.28023733798928,0,4.21501415226193,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57109389371906,1.92619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48865185073115,0,0,0,2.29326894192489,6.3900956275967,0,0,0,1.37771983728653,0,0,0.279759015438889,0,0,1.61737217095023,1.25812753484717,0,0.169732529954025,0,0,0,0,5.04715168008021,5.60399523799829,0,0,0.642292250964595,11.3357261060468,3.51194489925733,1.8460472781668,0,3.45786262321089,1.77623210195036,0,2.64998839952769,4.24691004051865,2.01771458373847,0,1.1441462864015,0,0,0,9.68184329776896,0,2.61906694481422,1.47394725759087,0,3.10672889244615,0,5.58054350553197,3.55128537085878,0,0,0,0,2.93853583571069,0,0,0,0,0.177404740325278,0,0,0.203909198930495,2.56513816895111,0,4.00433046811449,0.549451649953598,0,0,0,10.7963795609311,0,0,0,6.62576124598314,3.65102371835417,0,0,0,0,0,2.48497201534187,2.38597533325642,0,1.14553434272025,0.31020638566432,0,0,4.80936144714691,0,0,0,0,0.485710993059139,4.2109103423179,6.56537558032515,4.40004335877004,2.14597555874024,4.83738273679888,7.85006786546702,0,0,0,0,7.07029641304878,0,0,0,0,0,0,12.3927033346912,2.67830907908486,8.11658204946091,0,0,0,0,6.94194873650012,1.49581278420012,0,0,0,0,0,0.630832124175395,0.98339014767326,0,0,0,0,0,0.378893491091197,0,0,0,0,0,0,0,2.57903283935411,0,0,0.435433495793923,0,0,0.430333232356058,0,0,1.3874554964103,0,0.179650404213174,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.246301768349837,0.393553906568396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81264159483652,0,0.329250856225877,0,0.703702806881416,0,0,0,0,0,0,0,0,0,3.95102198979638,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.47179963489002,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84591752237042,8.33345949197939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84991942105343,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,9.61814965316141,0,0,0,0,1.9488432172667,0,2.43410110628385,0,0,3.36852972734796,0,4.73306034823102,4.56917875537661,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0.102268682502155,9.84678443688556,0,0,0,0,0,0,0,3.87733098438087,0.649376687132959,0,5.20855522170466,3.67331999984022,0,3.98277068999249,3.30529745380596,2.6002644994473,12.7555048099342,3.49925536059905,0,0,0,0,0,0,1.09692698576986,0.544692317594951,2.78847488557207,0,2.05095700524602,0.46112780877612,1.79515288819544,0.977826347298073,1.5950057986596,0,0.533034776018635,0,0,0,3.15833924864053,2.35275041181287,2.3495022176618,2.27704479269022,0,3.16497096792041,0.163232808159148,2.40300221437699,3.67860687561555,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0.063186579628488,0,0,0,0,0,0,2.27687636823834,2.77349346026277,0,1.46988596121566,0,0,0,0,0,0,0,0,0,4.24829966404928,2.98071917554485,3.79864775735272,4.30213042016567,3.68730573157055,0,3.79638258206047,3.16998917739033,3.09248809647972,0.171594997861965,0,0,0,0.951329442515298,1.67364554099733,1.73396969981747,5.49006120812886,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,0,0,0.0674035438541849,4.4292366681637,1.86281330544726,0,0,0,0,0,0.2249738915515,3.86900977278975,2.06548492637284,2.0126081255956,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0.246277562248017,0,4.53248366080503,0,0,0,0,0,2.11444506695002,0,0,0,0,8.10207690781571,0,2.55336503108073,0,0,0,0,3.45519011750515,4.43034089983493,1.95242023843141,3.755727921195,0,0,0,0,2.62458856720424,3.4879297034579,6.28023733798928,0,4.21501415226193,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57109389371906,1.92619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48865185073115,0,0,0,2.29326894192489,6.3900956275967,0,0,0,1.37771983728653,0,0,0.279759015438889,0,0,1.61737217095023,1.25812753484717,0,0.169732529954025,0,0,0,0,5.04715168008021,5.60399523799829,0,0,0.642292250964595,11.3357261060468,3.51194489925733,1.8460472781668,0,3.45786262321089,1.77623210195036,0,2.64998839952769,4.24691004051865,2.01771458373847,0,1.1441462864015,0,0,0,9.68184329776896,0,2.61906694481422,1.47394725759087,0,3.10672889244615,0,5.58054350553197,3.55128537085878,0,0,0,0,2.93853583571069,0,0,0,0,0.177404740325278,0,0,0.203909198930495,2.56513816895111,0,4.00433046811449,0.549451649953598,0,0,0,10.7963795609311,0,0,0,6.62576124598314,3.65102371835417,0,0,0,0,0,2.48497201534187,2.38597533325642,0,1.14553434272025,0.31020638566432,0,0,4.80936144714691,0,0,0,0,0.485710993059139,4.2109103423179,6.56537558032515,4.40004335877004,2.14597555874024,4.83738273679888,7.85006786546702,0,0,0,0,7.07029641304878,0,0,0,0,0,0,12.3927033346912,2.67830907908486,8.11658204946091,0,0,0,0,6.94194873650012,1.49581278420012,0,0,0,0,0,0.630832124175395,0.98339014767326,0,0,0,0,0,0.378893491091197,0,0,0,0,0,0,0,2.57903283935411,0,0,0.435433495793923,0,0,0.430333232356058,0,0,1.3874554964103,0,0.179650404213174,0,0,0.406896178315738,0,0,0 | ||
|short_description=p1@uc003bij.2,p1@uc003bik.1 | |||
}} | }} |
Latest revision as of 22:13, 28 July 2015
Short description: | p1@uc003bij.2, p1@uc003bik.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc003bij.2_5end, CAGE_peak_1_at_uc003bik.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 37bp_to_uc003bij.2, uc003bik.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 3.57e-07 | 20 |
endodermal cell | 6.14e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.45e-13 | 20 |
regional part of cerebral cortex | 4.57e-12 | 22 |
gyrus | 2.65e-10 | 6 |
cerebral cortex | 2.92e-10 | 25 |
pallium | 2.92e-10 | 25 |
cerebral hemisphere | 1.35e-08 | 32 |
telencephalon | 6.75e-08 | 34 |
regional part of telencephalon | 2.31e-07 | 32 |
brain grey matter | 9.29e-07 | 34 |
gray matter | 9.29e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 4.99e-34 | 239 |
cancer | 5.59e-33 | 235 |
cell type cancer | 4.91e-31 | 143 |
carcinoma | 3.92e-23 | 106 |
organ system cancer | 2.82e-16 | 137 |
adenocarcinoma | 1.06e-12 | 25 |
disease of anatomical entity | 2.50e-10 | 39 |
gastrointestinal system cancer | 1.43e-09 | 14 |
bronchus cancer | 2.30e-09 | 7 |
bronchogenic carcinoma | 2.30e-09 | 7 |
lung small cell carcinoma | 3.10e-08 | 4 |
respiratory system cancer | 6.70e-08 | 16 |
squamous cell carcinoma | 5.97e-07 | 14 |
lung cancer | 9.10e-07 | 15 |