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Difference between revisions of "MCL coexpression mm9:1417"

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|ontology_enrichment_disease=
 
|ontology_enrichment_disease=
 
|ontology_enrichment_uberon=UBERON:0000344!3.21e-13!15;UBERON:0000160!5.61e-13!31;UBERON:0001242!5.17e-11!13;UBERON:0000060!5.17e-11!13;UBERON:0001262!5.17e-11!13;UBERON:0004786!5.17e-11!13;UBERON:0002384!1.23e-10!46;UBERON:0000485!3.14e-10!11;UBERON:0003350!3.19e-09!9;UBERON:0004808!3.19e-09!9;UBERON:0001277!3.19e-09!9;UBERON:0005409!1.96e-07!47;UBERON:0001007!7.05e-07!116;UBERON:0001555!7.05e-07!116;UBERON:0007026!7.05e-07!116
 
|ontology_enrichment_uberon=UBERON:0000344!3.21e-13!15;UBERON:0000160!5.61e-13!31;UBERON:0001242!5.17e-11!13;UBERON:0000060!5.17e-11!13;UBERON:0001262!5.17e-11!13;UBERON:0004786!5.17e-11!13;UBERON:0002384!1.23e-10!46;UBERON:0000485!3.14e-10!11;UBERON:0003350!3.19e-09!9;UBERON:0004808!3.19e-09!9;UBERON:0001277!3.19e-09!9;UBERON:0005409!1.96e-07!47;UBERON:0001007!7.05e-07!116;UBERON:0001555!7.05e-07!116;UBERON:0007026!7.05e-07!116
 +
|tfbs_overrepresentation_for_novel_motifs=0.491922,0.0600685,0.464605,0.535892,0.346849,0.550971,0.645383,0.247459,0.257202,0.0835344,0.599767,0.632897,0.247704,0.6581,0.364314,0,0.856992,0.338549,0.656199,0.442204,1.09054,0.108444,0.657163,0.91309,0.472505,0.686615,0.223823,0.572827,0.394364,0.534301,0.558142,0.960397,0.336199,0.204204,0.364821,0.335531,0.326478,0.629145,0.303703,0.27383,0.907317,0.56353,0.327433,0.366415,0.161543,0.524258,0.77511,0.589246,0.0835644,0.397446,0.839084,0.714419,0.174327,1.10437,1.12205,0.66551,0.406788,0.619643,0.21472,0.663395,0.939962,0.724164,0.269393,0.827522,0.677043,0.869046,1.2599,1.61148,0.935192,1.46355,0.444872,0.253541,0.11437,1.156,0.208101,0.19692,0.589776,0.763395,0.922432,0.430551,0.254777,0.874787,0.722675,0.240896,1.03903,0.0539203,0.0610418,0.534643,0.780154,1.77427,1.33021,1.04409,0.973447,0.9304,0.2995,0.281222,0.244935,0.976308,0.775372,0.160254,0.326561,0.960112,1.08669,0.839694,0.838613,0.563071,0.8998,0.585058,0.435642,0.428007,0.484547,1.0885,0.431734,0.605144,1.33732,0.340765,0.0704207,0.53982,0.858327,0.322606,1.16147,0.805995,0.688501,0.762461,1.39185,0.926209,1.5739,0.966541,1.25836,0.356163,1.06946,0.52828,1.2285,1.62768,1.35909,0.106956,1.25097,0.564999,1.30952,2.14327,1.74232,1.26465,0.700956,0.971067,0.831964,0.564002,0.778321,2.10357,0.503174,0.348692,0.540361,0.0987301,1.10596,0.287383,0.678689,1.18867,0.71546,0.376898,0.48935,0.500417,1.31911,1.03816,0.926663,0.482185,0.82857,0.671017,0.325308,0.63125,0.0323861
 
}}
 
}}

Revision as of 10:52, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr19:24950169..24950179,+p2@Cycs
p2@Gm10053
Mm9::chr3:155177449..155177466,+p@chr3:155177449..155177466
+
Mm9::chr5:69852282..69852304,+p1@ENSMUST00000063197
Mm9::chr9:123217094..123217107,-p2@ENSMUST00000072166
Mm9::chrX:100958886..100958892,-p1@Gm6222
Mm9::chrX:73160443..73160451,+p1@ENSMUST00000122186


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
epithelial cell5.34e-1525
animal cell3.64e-12115
eukaryotic cell3.64e-12115
somatic cell4.99e-12118
hematopoietic lineage restricted progenitor cell1.42e-1125
motile cell3.49e-1154
endodermal cell7.27e-1120
connective tissue cell1.23e-1046
mesenchymal cell1.23e-1046
endo-epithelial cell1.55e-1015
hematopoietic cell1.72e-1032
hematopoietic oligopotent progenitor cell1.72e-1032
hematopoietic stem cell1.72e-1032
angioblastic mesenchymal cell1.72e-1032
hematopoietic multipotent progenitor cell1.72e-1032
lymphoid lineage restricted progenitor cell1.76e-0912
intestinal epithelial cell3.19e-099
epithelial cell of alimentary canal3.19e-099
mature alpha-beta T cell9.00e-099
alpha-beta T cell9.00e-099
immature T cell9.00e-099
mature T cell9.00e-099
immature alpha-beta T cell9.00e-099
T cell1.35e-0811
pro-T cell1.35e-0811
lymphocyte1.70e-0813
common lymphoid progenitor1.70e-0813
leukocyte1.71e-0817
nongranular leukocyte1.71e-0817
columnar/cuboidal epithelial cell2.01e-087
CD4-positive, alpha-beta T cell4.73e-088
brush border epithelial cell8.11e-086
gut absorptive cell8.11e-086
absorptive cell8.11e-086
enterocyte8.11e-086
nucleate cell1.85e-0716

Uber Anatomy
Ontology termp-valuen
mucosa3.21e-1315
intestine5.61e-1331
intestinal mucosa5.17e-1113
anatomical wall5.17e-1113
wall of intestine5.17e-1113
gastrointestinal system mucosa5.17e-1113
connective tissue1.23e-1046
simple columnar epithelium3.14e-1011
epithelium of mucosa3.19e-099
gastrointestinal system epithelium3.19e-099
intestinal epithelium3.19e-099
gastrointestinal system1.96e-0747
digestive system7.05e-07116
digestive tract7.05e-07116
primitive gut7.05e-07116


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}