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CL:0000827

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Name:pro-T cell
Namespace:FANTOM
Definition:"A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149]
Synonyms: "DN1 cell" NARROW []
"DN1 thymocyte" NARROW []
"pro-T lymphocyte" EXACT []
"progenitor T cell" EXACT []
"TN1 cell" NARROW []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000838(lymphoid lineage restricted progenitor cell)
develops_from:CL:0000051(common lymphoid progenitor)



Children


is a:CL:0000894 (DN1 thymic pro-T cell),CL:0002425 (early T lineage precursor)
develops from:CL:0000084 (T cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000827 (pro-T cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.9e-89FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_adb51b052a854ef1fb8a456f26f79061p@chr5:35859622..35859626, +
2.9e-89FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_adb51b052a854ef1fb8a456f26f79061p@chr5:35859622..35859626, +
1.02e-73FFCP PHASE1:Mm9::chr4:63522330..63522352,-#_a3ce6c48cad2ee1a015d5214c035444fp4@Tnfsf8
1.02e-73FFCP PHASE2:Mm9::chr4:63522330..63522352,-#_a3ce6c48cad2ee1a015d5214c035444fp4@Tnfsf8
1.33e-72FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_cb24ec96fa732cdbe20000e6cab7867bp@chr2:87053288..87053295, -
1.33e-72FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_cb24ec96fa732cdbe20000e6cab7867bp@chr2:87053288..87053295, -
1.48e-71FFCP PHASE1:Hg19::chr17:80085772..80085810,-#_fb6be7bcc71e4821e6d986bdb68eae3dp@chr17:80085772..80085810, -
1.48e-71FFCP PHASE2:Hg19::chr17:80085772..80085810,-#_fb6be7bcc71e4821e6d986bdb68eae3dp@chr17:80085772..80085810, -
6.78e-71FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_64dd6a29b5385c7fb135c5ade1c873c9p@chr19:10869146..10869168, -
6.78e-71FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@uc007tsm.1
6.78e-71FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@ENSMUST00000103733
6.78e-71FFCP PHASE1:Mm9::chr11:11590836..11590851,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr11:11590836..11590851, +
6.78e-71FFCP PHASE2:Mm9::chr11:11590836..11590851,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr11:11590836..11590851, +
6.78e-71FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_64dd6a29b5385c7fb135c5ade1c873c9p3@Tnfrsf25
6.78e-71FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr4:32339511..32339518, +
6.78e-71FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_64dd6a29b5385c7fb135c5ade1c873c9-, p@chr11:99015330..99015341
6.78e-71FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr6:48637679..48637692, +
6.78e-71FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr6:48637679..48637692, +
6.78e-71FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_64dd6a29b5385c7fb135c5ade1c873c9p@chr11:99015330..99015341, -
6.78e-71FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_64dd6a29b5385c7fb135c5ade1c873c9p3@Tnfrsf25
6.78e-71FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_64dd6a29b5385c7fb135c5ade1c873c9p@chr4:32339511..32339518, +
6.78e-71FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@uc007tsm.1
6.78e-71FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_64dd6a29b5385c7fb135c5ade1c873c9p1@ENSMUST00000103733
6.78e-71FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_64dd6a29b5385c7fb135c5ade1c873c9p@chr19:10869146..10869168, -
2.06e-70FFCP PHASE2:Hg19::chr11:118186681..118186704,-#_70112fb2700887119becbe317db69bfbp1@CU690625
2.06e-70FFCP PHASE1:Hg19::chr11:118186681..118186704,-#_70112fb2700887119becbe317db69bfbp1@CU690625
1.31e-69FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_47ac8f7499513d1f2ca32bbe5afd2368p10@HNRPLL
1.31e-69FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_47ac8f7499513d1f2ca32bbe5afd2368p10@HNRPLL
6.71e-69FFCP PHASE1:Hg19::chr17:29637535..29637559,+#_b96f39e8be57d0d0654e63a3b13a3fc3p@chr17:29637535..29637559, +
6.71e-69FFCP PHASE2:Hg19::chr17:29637535..29637559,+#_b96f39e8be57d0d0654e63a3b13a3fc3p@chr17:29637535..29637559, +
7.62e-69FFCP PHASE1:Mm9::chr4:63521957..63521980,-#_5763e780363e408c77e5fc0a2689d863p@chr4:63521957..63521980, -
7.62e-69FFCP PHASE2:Mm9::chr4:63521957..63521980,-#_5763e780363e408c77e5fc0a2689d863p@chr4:63521957..63521980, -
2.06e-68FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_ace75de5ff561bc8585e44c48d572e7e-, p@chr15:89179440..89179457
2.06e-68FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_ace75de5ff561bc8585e44c48d572e7ep@chr15:89179440..89179457, -
2.88e-67FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_b4e07e69221fd76c63a8ae8535f193fbp@chr5:35854487..35854499, -
2.88e-67FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_b4e07e69221fd76c63a8ae8535f193fbp@chr5:35854487..35854499, -
6.74e-66FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_c0173b33e6bcc6dc80456cd0f02cb387p@chr4:32335511..32335532, +
6.74e-66FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_c0173b33e6bcc6dc80456cd0f02cb387p@chr4:32335511..32335532, +
9.47e-66FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_6a8049a32e35dd98ff12f18e40bb90aap@chr5:35854779..35854826, +
9.47e-66FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_6a8049a32e35dd98ff12f18e40bb90aap@chr5:35854779..35854826, +
1.04e-65FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_62fc962d86daf2e536dc295af3625958-, p@chr4:103551892..103551903
1.04e-65FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_62fc962d86daf2e536dc295af3625958p@chr4:103551892..103551903, -
3.53e-65FFCP PHASE1:Hg19::chr16:3117688..3117736,+#_96a9b5563fd98fe8e9ba179f6e115bbbp7@IL32
3.53e-65FFCP PHASE2:Hg19::chr16:3117688..3117736,+#_96a9b5563fd98fe8e9ba179f6e115bbbp7@IL32
7.34e-65FFCP PHASE1:Hg19::chr1:90075464..90075470,-#_239ddf57e73507176379196c37ec606cp@chr1:90075464..90075470, -
7.34e-65FFCP PHASE2:Hg19::chr1:90075464..90075470,-#_239ddf57e73507176379196c37ec606c-, p@chr1:90075464..90075470
1.94e-64FFCP PHASE1:Mm9::chr6:129225479..129225509,+#_4c45e4a7d12a7cf68591536dc941a3a3p@chr6:129225479..129225509, +
1.94e-64FFCP PHASE2:Mm9::chr6:129225479..129225509,+#_4c45e4a7d12a7cf68591536dc941a3a3p@chr6:129225479..129225509, +
3.0e-64FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_353aa8e9b54bbcc7c6b94126535e0722p1@GTSCR1
3.0e-64FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_353aa8e9b54bbcc7c6b94126535e0722p1@GTSCR1
3.36e-64FFCP PHASE1:Mm9::chr4:63522312..63522327,-#_c36f261663c074616f706e247f3a3a39p3@Tnfsf8
3.36e-64FFCP PHASE2:Mm9::chr4:63522312..63522327,-#_c36f261663c074616f706e247f3a3a39p3@Tnfsf8
3.94e-64FFCP PHASE2:Hg19::chr1:32716843..32716848,+#_ab28c98492b17d5f9799b996957e4706p6@LCK
3.94e-64FFCP PHASE1:Hg19::chr1:32716843..32716848,+#_ab28c98492b17d5f9799b996957e4706p6@LCK
4.15e-64FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_54c664ddd2278fe2d289903699bd924dp@chr8:84082784..84082795, +
4.15e-64FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_54c664ddd2278fe2d289903699bd924dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_54c664ddd2278fe2d289903699bd924dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_54c664ddd2278fe2d289903699bd924dp1@ENSMUST00000103714
4.15e-64FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_54c664ddd2278fe2d289903699bd924dp@chr14:56207154..56207165, -
4.15e-64FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_54c664ddd2278fe2d289903699bd924dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_54c664ddd2278fe2d289903699bd924dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_54c664ddd2278fe2d289903699bd924dp@chr8:84082784..84082795, +
4.15e-64FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_54c664ddd2278fe2d289903699bd924dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_54c664ddd2278fe2d289903699bd924dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_54c664ddd2278fe2d289903699bd924dp1@ENSMUST00000103714
4.15e-64FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_54c664ddd2278fe2d289903699bd924d-, p@chr14:56207154..56207165
4.17e-64FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_0201670519fc76de4196288b2fd1e09dp@chr5:35856882..35856909, -
4.17e-64FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_0201670519fc76de4196288b2fd1e09dp@chr5:35856882..35856909, -
4.91e-64FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_8ce822260c81ab134727451546839a23p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_8ce822260c81ab134727451546839a23p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_8ce822260c81ab134727451546839a23+, p@chr14:54838649..54838660
4.91e-64FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_8ce822260c81ab134727451546839a23p@chr4:32422919..32422935, +
4.91e-64FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_8ce822260c81ab134727451546839a23p@chr14:54838649..54838660, +
4.91e-64FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_8ce822260c81ab134727451546839a23p@chr4:32422919..32422935, +
5.81e-64FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_b81f7a6718c858e44a590ad93b640d7cp@chr15:27786221..27786240, -
5.81e-64FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_b81f7a6718c858e44a590ad93b640d7cp@chr15:27786221..27786240, -
5.87e-64FFCP PHASE2:Hg19::chr2:98330009..98330020,+#_6729d1c22c0e6f1b832bdb5d99261832p3@ZAP70
5.87e-64FFCP PHASE1:Hg19::chr2:98330009..98330020,+#_6729d1c22c0e6f1b832bdb5d99261832p3@ZAP70
6.87e-64FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_f346272421f87c2775300a775f62ea29p@chr3:103672068..103672090, -
6.87e-64FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_f346272421f87c2775300a775f62ea29p@chr6:99215016..99215036, +
6.87e-64FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_f346272421f87c2775300a775f62ea29p@chr3:103672068..103672090, -
6.87e-64FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_f346272421f87c2775300a775f62ea29p@chr6:99215016..99215036, +
7.69e-64FFCP PHASE2:Mm9::chr1:108608936..108608961,-#_7b5801703819d67c466b93fa46cfd0fdp@chr1:108608936..108608961, -
7.69e-64FFCP PHASE1:Mm9::chr1:108608936..108608961,-#_7b5801703819d67c466b93fa46cfd0fdp@chr1:108608936..108608961, -
8.12e-64FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_d0fe9d1e2a5c41f0e2817b09447f6455p@chr6:48634453..48634468, -
8.12e-64FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_d0fe9d1e2a5c41f0e2817b09447f6455p@chr6:48634453..48634468, -
1.13e-63FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_ce45451467806041f9943c0f5e37de14p5@uc007vxz.1
1.13e-63FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_ce45451467806041f9943c0f5e37de14p5@uc007vxz.1
1.59e-63FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_2342914e768b29d864662c273b9db822p@chr7:132751140..132751183, +
1.59e-63FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_2342914e768b29d864662c273b9db822p@chr7:132751140..132751183, +
4.29e-63FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_f735b488960fa2c6aa93dcadc6d84807p@chr4:32328217..32328228, -
4.29e-63FFCP PHASE1:Mm9::chr2:11081400..11081406,-#_f735b488960fa2c6aa93dcadc6d84807p@chr2:11081400..11081406, -
4.29e-63FFCP PHASE2:Mm9::chr4:155396384..155396395,-#_f735b488960fa2c6aa93dcadc6d84807-, p@chr4:155396384..155396395
4.29e-63FFCP PHASE2:Mm9::chr4:155405070..155405083,+#_f735b488960fa2c6aa93dcadc6d84807p@chr4:155405070..155405083, +
4.29e-63FFCP PHASE2:Mm9::chr6:99045597..99045607,-#_f735b488960fa2c6aa93dcadc6d84807p@chr6:99045597..99045607, -
4.29e-63FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_f735b488960fa2c6aa93dcadc6d84807p@chr14:53242248..53242261, +
4.29e-63FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_f735b488960fa2c6aa93dcadc6d84807p@chr14:54817583..54817593, -
4.29e-63FFCP PHASE1:Mm9::chr14:54831066..54831079,+#_f735b488960fa2c6aa93dcadc6d84807p@chr14:54831066..54831079, +
4.29e-63FFCP PHASE2:Mm9::chr6:125215605..125215616,+#_f735b488960fa2c6aa93dcadc6d84807p3@4930417O13Rik
4.29e-63FFCP PHASE2:Mm9::chr1:167720341..167720362,+#_f735b488960fa2c6aa93dcadc6d84807p@chr1:167720341..167720362, +