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CL:0000244

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Name:transitional epithelial cell
Namespace:FANTOM
Definition:"A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium." [GOC:tfm, ISBN:0721662544]
Xrefs:
links:
FMA:66778


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell)



Children


is a:CL:0000731 (urothelial cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000244 (transitional epithelial cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.31e-99FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_609df7436b8a002567bcd82c1d0dd8acp9@BTBD16
8.31e-99FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_609df7436b8a002567bcd82c1d0dd8acp9@BTBD16
7.02e-88FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_858ba46728ddc331dec5260b5c26cff9p6@BTBD16
7.02e-88FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_858ba46728ddc331dec5260b5c26cff9p6@BTBD16
6.32e-80FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_4f426c9fe6e31229bf3e8aa6552f00f6p16@PTHLH
6.32e-80FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_4f426c9fe6e31229bf3e8aa6552f00f6p16@PTHLH
1.16e-79FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_17ea11fbfe64f63f2096ec2e5255238dp@chr5:61213179..61213189, -
1.16e-79FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_17ea11fbfe64f63f2096ec2e5255238d-, p@chr5:61213179..61213189
3.32e-74FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_54baad3d7b9d3f71acc53700048ca117p@chrX:102977640..102977644, -
3.32e-74FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_54baad3d7b9d3f71acc53700048ca117p@chrX:102977640..102977644, -
4.26e-74FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_d73fef576312ea22cb8abfe474f583f2p4@IFNK
4.26e-74FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_d73fef576312ea22cb8abfe474f583f2p4@IFNK
2.23e-72FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_de84605926027f731185b3a983c646f9p@chr1:40492754..40492762, +
2.23e-72FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_de84605926027f731185b3a983c646f9p@chr1:40492754..40492762, +
2.68e-72FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_43b63565bcb5a04831db711bffc17e50p@chr10:3954276..3954287, +
2.68e-72FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_43b63565bcb5a04831db711bffc17e50p@chr10:3954276..3954287, +
3.47e-67FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_67860149cc6e8e2f28c2b68e98e6c3f9p17@PTHLH
3.47e-67FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_67860149cc6e8e2f28c2b68e98e6c3f9p17@PTHLH
2.4e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_ddc3a03b5cfeddffc85bf577251c52eep38@PTK2
2.4e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_ddc3a03b5cfeddffc85bf577251c52eep38@PTK2
2.61e-64FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_28bd00aa61416a8e496ec86de6c7e9cfp@chr5:61213127..61213133, -
2.61e-64FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_28bd00aa61416a8e496ec86de6c7e9cfp@chr5:61213127..61213133, -
7.67e-64FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_d265504237023e7769656a8642e1eeb3p@chr21:44168074..44168079, +
7.67e-64FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_d265504237023e7769656a8642e1eeb3p@chr21:44168074..44168079, +
1.18e-63FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_a71386fc7633cfff69897874ce36c428p@chr4:125341514..125341526, -
1.18e-63FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_a71386fc7633cfff69897874ce36c428p@chr4:125341514..125341526, -
1.67e-61FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_6bc5a18aeb69fb0a88a22c13ba8072e4p@chr10:127763979..127763984, +
1.67e-61FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_6bc5a18aeb69fb0a88a22c13ba8072e4p@chr10:127763979..127763984, +
1.06e-56FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_160208c6c2c632d3ede4fad417cf82b5p@chr11:127965855..127965866, +
1.06e-56FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_160208c6c2c632d3ede4fad417cf82b5p@chr11:127965855..127965866, +
1.64e-56FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_f9658674d86f04adb687cba2211d03a3p@chr19:15065111..15065171, -
1.64e-56FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_f9658674d86f04adb687cba2211d03a3p@chr19:15065111..15065171, -
4.09e-54FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_57010f4383a912d08a65c47e27144c11p3@BTBD16
4.09e-54FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_57010f4383a912d08a65c47e27144c11p3@BTBD16
1.81e-53FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_50497459846ae12225c7c6c6413cd443p13@MTHFD1L
1.81e-53FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_50497459846ae12225c7c6c6413cd443p13@MTHFD1L
7.95e-53FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_8105c6b559777fef179b6b755815b084p@chr7:2019948..2019961, -
7.95e-53FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_8105c6b559777fef179b6b755815b084p@chr7:2019948..2019961, -
1.07e-50FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_94a4911fb33e1d880b83713ee034c449p30@AGAP3
1.07e-50FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_94a4911fb33e1d880b83713ee034c449p30@AGAP3
1.21e-50FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_2e158ba17e66105ce80d03266c6874e6p@chr2:31560793..31560814, -
1.21e-50FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_2e158ba17e66105ce80d03266c6874e6p@chr2:31560793..31560814, -
2.23e-50FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_c711b08b9d0ba76dc8f7d872e3821874p@chr13:20934450..20934456, +
2.23e-50FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_c711b08b9d0ba76dc8f7d872e3821874p@chr13:20934450..20934456, +
5.14e-50FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_ba406d4affbaa43bc7b8b63d0c5dc52ap@chr14:85935018..85935023, -
5.14e-50FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_ba406d4affbaa43bc7b8b63d0c5dc52ap@chr14:85935018..85935023, -
6.6e-50FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_0524b5f60ef3b2dbbd26048b2f386db0-, p@chr9:21564382..21564387
6.6e-50FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_0524b5f60ef3b2dbbd26048b2f386db0p@chr9:113802868..113802878, -
6.6e-50FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_0524b5f60ef3b2dbbd26048b2f386db0p@chr9:113802868..113802878, -
6.6e-50FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_0524b5f60ef3b2dbbd26048b2f386db0p@chr9:21564382..21564387, -
8.47e-50FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_50f652efae485eaaa16c5d288ec53463p@chr19:43965689..43965700, -
8.47e-50FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_50f652efae485eaaa16c5d288ec53463p@chr19:43965689..43965700, -
1.41e-49FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_13ebc93352b065d47e0afea4a55641c6p32@FRMD6
1.41e-49FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_13ebc93352b065d47e0afea4a55641c6p32@FRMD6
5.41e-48FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_c45ef719d13a042a598bc6894540d238p@chr21:45020721..45020728, -
5.41e-48FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_c45ef719d13a042a598bc6894540d238-, p@chr21:45020721..45020728
8.73e-48FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_395a6bbf04d5bcd264166da97f74012fp@chr8:143814087..143814102, -
8.73e-48FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_395a6bbf04d5bcd264166da97f74012fp@chr8:143814087..143814102, -
2.66e-45FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_b06aa7aec7c03905f95f5ee007eed696p@chr1:183192299..183192310, +
2.66e-45FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_b06aa7aec7c03905f95f5ee007eed696p@chr1:183192299..183192310, +
3.1e-45FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_de53bc5598ae5ff62594deba1f9c1515p@chr4:125341479..125341498, -
3.1e-45FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_de53bc5598ae5ff62594deba1f9c1515p@chr2:20402306..20402318, -
3.1e-45FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_de53bc5598ae5ff62594deba1f9c1515p@chr2:20402306..20402318, -
3.1e-45FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_de53bc5598ae5ff62594deba1f9c1515p@chr4:125341479..125341498, -
4.87e-45FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_6f5f34b0b246b701308110dc85a4b2ecp1@IFNK
4.87e-45FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_6f5f34b0b246b701308110dc85a4b2ecp1@IFNK
5.66e-45FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_047aed3c2ed4e9f4cdef0274562b7e0ep6@GJB6
5.66e-45FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_047aed3c2ed4e9f4cdef0274562b7e0ep6@GJB6
5.66e-45FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_047aed3c2ed4e9f4cdef0274562b7e0ep@chr1:99387558..99387571, -
5.66e-45FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_047aed3c2ed4e9f4cdef0274562b7e0ep@chr1:99387558..99387571, -
1.56e-43FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_467cdade7fc2592dec97deaf8512253bp2@BTBD16
1.56e-43FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_467cdade7fc2592dec97deaf8512253bp2@BTBD16
1.27e-41FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_f3f211c9f3b819eff2728becf7b50898p@chr1:183212642..183212654, +
1.27e-41FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_f3f211c9f3b819eff2728becf7b50898p@chr1:183212642..183212654, +
2.53e-41FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_fad72b185a6222c7b81e115275e5c7fbp19@NDST1
2.53e-41FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_fad72b185a6222c7b81e115275e5c7fbp@chr6:44096519..44096530, -
2.53e-41FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_fad72b185a6222c7b81e115275e5c7fbp@chr6:44096519..44096530, -
2.53e-41FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_fad72b185a6222c7b81e115275e5c7fbp19@NDST1
2.79e-41FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_8d05fe5f12d50a26ce41fc1d9e840377p@chr13:20762566..20762577, -
2.79e-41FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_8d05fe5f12d50a26ce41fc1d9e840377p@chr13:20762566..20762577, -
7.76e-41FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_f9f4bab6535566951ca876e44950a789p@chr5:146263947..146263959, -
7.76e-41FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_f9f4bab6535566951ca876e44950a789p@chr5:146263947..146263959, -
1.75e-40FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_81344674af14a6462fb888afbc6b60fdp@chr1:183204832..183204840, +
1.75e-40FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_81344674af14a6462fb888afbc6b60fdp@chr1:183204832..183204840, +
1.81e-40FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_5d28b5a9e71b2b34c75eceab98b07686p25@KCNJ15
1.81e-40FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_5d28b5a9e71b2b34c75eceab98b07686p25@KCNJ15
4.05e-40FFCP PHASE1:Hg19::chr2:31560770..31560779,-#_e33bb7e92fdf29007a999a07a55c7d88p@chr2:31560770..31560779, -
4.05e-40FFCP PHASE2:Hg19::chr2:31560770..31560779,-#_e33bb7e92fdf29007a999a07a55c7d88p@chr2:31560770..31560779, -
1.54e-39FFCP PHASE2:Hg19::chr10:3954241..3954256,+#_5d5e186b3f437255718df429932cf2b5p@chr10:3954241..3954256, +
1.54e-39FFCP PHASE1:Hg19::chr10:3954241..3954256,+#_5d5e186b3f437255718df429932cf2b5p@chr10:3954241..3954256, +
1.44e-38FFCP PHASE2:Hg19::chr1:183204785..183204796,+#_76e1a39402cca785bd71b2dade019febp@chr1:183204785..183204796, +
1.44e-38FFCP PHASE1:Hg19::chr1:183204785..183204796,+#_76e1a39402cca785bd71b2dade019febp@chr1:183204785..183204796, +
5.23e-38FFCP PHASE2:Hg19::chr3:52083895..52083904,-#_6665582fd091c71ff0cbbe0d3489870cp21@DUSP7
5.23e-38FFCP PHASE1:Hg19::chr3:52083895..52083904,-#_6665582fd091c71ff0cbbe0d3489870cp21@DUSP7
6.73e-38FFCP PHASE2:Hg19::chr1:183205712..183205723,+#_0b8cc8c5bad0fa29072f649d58dd5719p@chr1:183205712..183205723, +
6.73e-38FFCP PHASE1:Hg19::chr1:183205712..183205723,+#_0b8cc8c5bad0fa29072f649d58dd5719p@chr1:183205712..183205723, +
7.63e-38FFCP PHASE2:Hg19::chr2:43266741..43266748,-#_a7247a611ce8523ef6d5b89364398db5p2@ENST00000449766
7.63e-38FFCP PHASE1:Hg19::chr2:43266741..43266748,-#_a7247a611ce8523ef6d5b89364398db5p2@ENST00000449766
2.18e-37FFCP PHASE1:Hg19::chr13:20763282..20763295,-#_432ccf604c46ce0efe980092c2175238p6@GJB2
2.18e-37FFCP PHASE2:Hg19::chr13:20763282..20763295,-#_432ccf604c46ce0efe980092c2175238p6@GJB2