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CL:0002371

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Name:somatic cell
Namespace:FANTOM
Definition:"A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)." [GOC:tfm, ISBN:0721662544]
Xrefs:
links:

BTO:0001268
FMA:72300

WBbt:0008378
Created by:tmeehan
Creation date:2010-09-24T09:44:42Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000003(native cell)



Children


is a:CL:0000068 (duct epithelial cell),CL:0000075 (columnar/cuboidal epithelial cell),CL:0000079 (stratified epithelial cell),CL:0000083 (epithelial cell of pancreas),CL:0000098 (sensory epithelial cell),CL:0000150 (glandular epithelial cell),CL:0000182 (hepatocyte),CL:0000186 (myofibroblast cell),CL:0000187 (muscle cell),CL:0000188 (cell of skeletal muscle),CL:0000244 (transitional epithelial cell),CL:0000349 (extraembryonic cell),CL:0000666 (fenestrated cell),CL:0000680 (muscle precursor cell),CL:0000723 (somatic stem cell),CL:0000988 (hematopoietic cell),CL:0002076 (endo-epithelial cell),CL:0002077 (ecto-epithelial cell),CL:0002078 (meso-epithelial cell),CL:0002222 (vertebrate lens cell),CL:0002319 (neural cell),CL:0002320 (connective tissue cell),CL:0002327 (mammary gland epithelial cell),CL:0002494 (cardiocyte),CL:0002535 (epithelial cell of cervix),CL:0002546 (embryonic blood vessel endothelial progenitor cell),CL:0002559 (hair follicle cell),CL:0009004 (retinal cell),CL:1000415 (epithelial cell of gall bladder),CL:1000497 (kidney cell)
disjoint from:CL:0000039 (germ line cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
  • 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
  • 10413-106B8 (glioma cell line:GI-1)
  • 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10419-106C5 (breast carcinoma cell line:MDA-MB-453)

... further results Mouse (Mus musculus)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
  • 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
  • 10413-106B8 (glioma cell line:GI-1)
  • 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10419-106C5 (breast carcinoma cell line:MDA-MB-453)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002371 (somatic cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


No analysis results for this cluster