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CL:0000826

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Name:pro-B cell
Namespace:FANTOM
Definition:"A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [GOC:add, ISBN:0781735149, PMID:12633665]
Xrefs:
links:
BTO:0003104
Synonyms: "pre-B cell (Philadelphia nomenclature)" RELATED [PMID:11244048]
"pre-pro B cell" BROAD [PMID:17582343]
"pro-B lymphocyte" EXACT []
"pro-B-cell" EXACT []
"pro-B-lymphocyte" EXACT []
"progenitor B cell" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000838(lymphoid lineage restricted progenitor cell)
develops_from:CL:0000051(common lymphoid progenitor)



Children


disjoint from:CL:0000817 (precursor B cell)
develops from:CL:0000236 (B cell),CL:0000945 (lymphocyte of B lineage),CL:0000955 (pre-B-II cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000826 (pro-B cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.92e-147FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_d06da43391ca56adb936d93ceac8db1ep2@CU689419
6.92e-147FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_d06da43391ca56adb936d93ceac8db1ep2@CU689419
6.67e-144FFCP PHASE1:Hg19::chr5:132439186..132439209,+#_5bb408a7862a6984d509e7dd9c70b6afp13@HSPA4
6.67e-144FFCP PHASE2:Hg19::chr5:132439186..132439209,+#_5bb408a7862a6984d509e7dd9c70b6afp13@HSPA4
3.04e-141FFCP PHASE2:Hg19::chr3:121797478..121797512,-#_04e69eeb4599841ddea105996672c686p@chr3:121797478..121797512, -
3.04e-141FFCP PHASE1:Hg19::chr3:121797478..121797512,-#_04e69eeb4599841ddea105996672c686p@chr3:121797478..121797512, -
1.84e-138FFCP PHASE2:Hg19::chr19:7766976..7766982,-#_e3a2af9c3cbe6a5a052f9cf368af5f2ap9@FCER2
1.84e-138FFCP PHASE1:Hg19::chr19:7766976..7766982,-#_e3a2af9c3cbe6a5a052f9cf368af5f2ap9@FCER2
1.52e-135FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_37ee5e7460a3c16c1ba96e3ea381f265p@chr9:37037005..37037011, +
1.52e-135FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_37ee5e7460a3c16c1ba96e3ea381f265p@chr9:37037005..37037011, +
3.9e-131FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_9dfc9363bdc468570a390c2b0643dadfp@chr12:111106975..111106991, -
3.9e-131FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_9dfc9363bdc468570a390c2b0643dadfp@chr12:111106975..111106991, -
3.51e-130FFCP PHASE2:Hg19::chr1:31225180..31225207,-#_6c6fa8ec10e94da6a5feeaeb0ccc1c10-, p@chr1:31225180..31225207
3.51e-130FFCP PHASE1:Hg19::chr1:31225180..31225207,-#_6c6fa8ec10e94da6a5feeaeb0ccc1c10p@chr1:31225180..31225207, -
5.16e-123FFCP PHASE1:Hg19::chr11:111228348..111228370,-#_7aedab77fbde0fe92b9d3f0b057f7f4cp@chr11:111228348..111228370, -
5.16e-123FFCP PHASE2:Hg19::chr11:111228348..111228370,-#_7aedab77fbde0fe92b9d3f0b057f7f4cp@chr11:111228348..111228370, -
9.65e-122FFCP PHASE1:Hg19::chr3:112178705..112178716,-#_33f8323775a6eb18e7d9055334d92f54p@chr3:112178705..112178716, -
9.65e-122FFCP PHASE2:Hg19::chr3:112178705..112178716,-#_33f8323775a6eb18e7d9055334d92f54p@chr3:112178705..112178716, -
5.62e-121FFCP PHASE2:Hg19::chr14:106329470..106329481,-#_722eb5e851529df7b5b765a78922cf85p1@IGHJ6
5.62e-121FFCP PHASE1:Hg19::chr14:106329470..106329481,-#_722eb5e851529df7b5b765a78922cf85p1@IGHJ6
1.12e-120FFCP PHASE1:Hg19::chr8:110535068..110535088,+#_b87f7c58a0c21c03e5fb371dda82e76ep3@PKHD1L1
1.12e-120FFCP PHASE2:Hg19::chr8:110535068..110535088,+#_b87f7c58a0c21c03e5fb371dda82e76ep3@PKHD1L1
4.51e-120FFCP PHASE1:Hg19::chr18:56631315..56631351,+#_149b9e4e2c8056e2888d6773c70dd20ap@chr18:56631315..56631351, +
4.51e-120FFCP PHASE2:Hg19::chr18:56631315..56631351,+#_149b9e4e2c8056e2888d6773c70dd20ap@chr18:56631315..56631351, +
5.49e-120FFCP PHASE1:Hg19::chr9:37284234..37284268,+#_121510dfd8a593f4d660e7acfc0fc4e6p3@ZCCHC7
5.49e-120FFCP PHASE2:Hg19::chr9:37284234..37284268,+#_121510dfd8a593f4d660e7acfc0fc4e6p3@ZCCHC7
2.35e-119FFCP PHASE2:Hg19::chr6:6587579..6587601,-#_f78b3c91e749c8daccc3a3b72ba87d08p3@LY86-AS1
2.35e-119FFCP PHASE1:Hg19::chr6:6587579..6587601,-#_f78b3c91e749c8daccc3a3b72ba87d08p3@LY86-AS1
7.68e-117FFCP PHASE2:Hg19::chr22:22398325..22398339,-#_6d89dac1752526579b04092d53722863p1@PRAMEL
7.68e-117FFCP PHASE1:Hg19::chr22:22398325..22398339,-#_6d89dac1752526579b04092d53722863p1@PRAMEL
1.23e-115FFCP PHASE1:Hg19::chr17:9955844..9955857,-#_ec6890792495791fd9e463732fc9d9c1p@chr17:9955844..9955857, -
1.23e-115FFCP PHASE2:Hg19::chr17:9955844..9955857,-#_ec6890792495791fd9e463732fc9d9c1p@chr17:9955844..9955857, -
1.66e-115FFCP PHASE2:Hg19::chr2:232536651..232536664,+#_53fabc6774721ee92d5c728186f4f496p@chr2:232536651..232536664, +
1.66e-115FFCP PHASE1:Hg19::chr2:232536651..232536664,+#_53fabc6774721ee92d5c728186f4f496p@chr2:232536651..232536664, +
5.28e-115FFCP PHASE2:Hg19::chr16:85936539..85936562,+#_13a6ec94aed736ef5d428af645461741p3@IRF8
5.28e-115FFCP PHASE1:Hg19::chr16:85936539..85936562,+#_13a6ec94aed736ef5d428af645461741p3@IRF8
7.49e-115FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_2bec7212f8226d3b80cfca7efbee45a8p@chr22:50318813..50318835, +
7.49e-115FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_2bec7212f8226d3b80cfca7efbee45a8p@chr22:50318813..50318835, +
1.85e-114FFCP PHASE2:Hg19::chr2:65159562..65159594,-#_08a4611cab06792518f3215588c0c2e8p1@LOC400958
1.85e-114FFCP PHASE1:Hg19::chr2:65159562..65159594,-#_08a4611cab06792518f3215588c0c2e8p1@LOC400958
2.05e-114FFCP PHASE1:Hg19::chr16:12059021..12059048,+#_e21ed523f90c21065a8eb8f3199b8902p2@TNFRSF17
2.05e-114FFCP PHASE2:Hg19::chr16:12059021..12059048,+#_e21ed523f90c21065a8eb8f3199b8902p2@TNFRSF17
3.02e-114FFCP PHASE2:Hg19::chr16:12058994..12059003,+#_89707f817c561d0e96bb2991de2b8279p4@TNFRSF17
3.02e-114FFCP PHASE1:Hg19::chr16:12058994..12059003,+#_89707f817c561d0e96bb2991de2b8279p4@TNFRSF17
4.49e-114FFCP PHASE1:Hg19::chr11:60233507..60233518,+#_1dd652d8a8f5cb95ecabc938e3f96e78p3@MS4A1
4.49e-114FFCP PHASE2:Hg19::chr11:60233507..60233518,+#_1dd652d8a8f5cb95ecabc938e3f96e78p3@MS4A1
2.12e-112FFCP PHASE2:Hg19::chr10:98460644..98460661,-#_f727d13442f8cfac881b3d7714822528p5@PIK3AP1
2.12e-112FFCP PHASE1:Hg19::chr10:98460644..98460661,-#_f727d13442f8cfac881b3d7714822528p5@PIK3AP1
2.96e-112FFCP PHASE1:Hg19::chr15:31523055..31523071,-#_c1271927bc99a25acf5fe04c12fc7bc9p1@LOC283710
2.96e-112FFCP PHASE2:Hg19::chr15:31523055..31523071,-#_c1271927bc99a25acf5fe04c12fc7bc9p1@LOC283710
9.89e-112FFCP PHASE2:Hg19::chr14:106328158..106328168,-#_2a1f4de17731afa3bc96b632c09d62b9p6@IGHM
9.89e-112FFCP PHASE1:Hg19::chr14:106328158..106328168,-#_2a1f4de17731afa3bc96b632c09d62b9p6@IGHM
8.67e-110FFCP PHASE1:Hg19::chr1:111670644..111670656,-#_d14c7e2212be006fcd77338e8de82a6fp7@DRAM2
8.67e-110FFCP PHASE2:Hg19::chr1:111670644..111670656,-#_d14c7e2212be006fcd77338e8de82a6fp7@DRAM2
2.9e-109FFCP PHASE1:Hg19::chr11:14346810..14346831,-#_071683d8e5f7b256d9f27b63e1b0b602p@chr11:14346810..14346831, -
2.9e-109FFCP PHASE2:Hg19::chr11:14346810..14346831,-#_071683d8e5f7b256d9f27b63e1b0b602-, p@chr11:14346810..14346831
4.14e-109FFCP PHASE2:Hg19::chr9:37027587..37027596,-#_30f2fbb29b002b5bcc626735e3c688dfp@chr9:37027587..37027596, -
4.14e-109FFCP PHASE2:Hg19::chr11:111225012..111225024,-#_30f2fbb29b002b5bcc626735e3c688dfp@chr11:111225012..111225024, -
4.14e-109FFCP PHASE1:Hg19::chr11:111225012..111225024,-#_30f2fbb29b002b5bcc626735e3c688dfp@chr11:111225012..111225024, -
4.14e-109FFCP PHASE2:Hg19::chr8:11350850..11350859,+#_30f2fbb29b002b5bcc626735e3c688dfp@chr8:11350850..11350859, +
4.14e-109FFCP PHASE1:Hg19::chr8:11350850..11350859,+#_30f2fbb29b002b5bcc626735e3c688dfp@chr8:11350850..11350859, +
4.14e-109FFCP PHASE1:Hg19::chr9:37027587..37027596,-#_30f2fbb29b002b5bcc626735e3c688dfp@chr9:37027587..37027596, -
5.57e-109FFCP PHASE1:Hg19::chr2:232536534..232536561,-#_5265f2302cf8e4099e92788acdf7a16ep@chr2:232536534..232536561, -
5.57e-109FFCP PHASE2:Hg19::chr2:232536534..232536561,-#_5265f2302cf8e4099e92788acdf7a16ep@chr2:232536534..232536561, -
6.72e-109FFCP PHASE2:Hg19::chr14:106321725..106321735,-#_0b243cf3258892195fe5ea8423ee5a6bp7@FJ197674
6.72e-109FFCP PHASE1:Hg19::chr14:106321725..106321735,-#_0b243cf3258892195fe5ea8423ee5a6bp7@FJ197674
2.91e-108FFCP PHASE1:Hg19::chr14:106328131..106328143,-#_a3f86db2f3f6cb2eae9d3ea782b6f9c2p4@IGHM
2.91e-108FFCP PHASE2:Hg19::chr14:106328131..106328143,-#_a3f86db2f3f6cb2eae9d3ea782b6f9c2p4@IGHM
4.43e-108FFCP PHASE2:Hg19::chr19:18209729..18209742,-#_96dd8edc1ca87cbef25d70e544812c1cp3@IL12RB1
4.43e-108FFCP PHASE1:Hg19::chr19:18209729..18209742,-#_96dd8edc1ca87cbef25d70e544812c1cp3@IL12RB1
6.46e-108FFCP PHASE2:Hg19::chr13:31019875..31019895,+#_bfcb34db62ac0b2bc12cce4758d13adbp@chr13:31019875..31019895, +
6.46e-108FFCP PHASE1:Hg19::chr13:31019875..31019895,+#_bfcb34db62ac0b2bc12cce4758d13adbp@chr13:31019875..31019895, +
3.54e-107FFCP PHASE1:Hg19::chr12:111107001..111107019,-#_21423403e2ea2c74cc098323f2bd1885p@chr12:111107001..111107019, -
3.54e-107FFCP PHASE2:Hg19::chr12:111107001..111107019,-#_21423403e2ea2c74cc098323f2bd1885p@chr12:111107001..111107019, -
2.64e-106FFCP PHASE2:Hg19::chr2:17934493..17934510,+#_28457528318ac1669ac550c6d0e6124ap@chr2:17934493..17934510, +
2.64e-106FFCP PHASE1:Hg19::chr2:17934493..17934510,+#_28457528318ac1669ac550c6d0e6124ap@chr2:17934493..17934510, +
8.6e-106FFCP PHASE1:Hg19::chr19:7764975..7764994,-#_e67dea2d4dd5a61fadd215830df7ed62p7@FCER2
8.6e-106FFCP PHASE2:Hg19::chr19:7764975..7764994,-#_e67dea2d4dd5a61fadd215830df7ed62p7@FCER2
2.32e-105FFCP PHASE2:Hg19::chr19:42385139..42385152,+#_e6f34e1dd372d40375ac14fb1496d567p@chr19:42385139..42385152, +
2.32e-105FFCP PHASE1:Hg19::chr19:42385139..42385152,+#_e6f34e1dd372d40375ac14fb1496d567p@chr19:42385139..42385152, +
3.56e-105FFCP PHASE1:Hg19::chr22:42322346..42322363,-#_6910b6e077beb960610948ed7328002cp@chr22:42322346..42322363, -
3.56e-105FFCP PHASE2:Hg19::chr22:42322346..42322363,-#_6910b6e077beb960610948ed7328002c-, p@chr22:42322346..42322363
4.83e-105FFCP PHASE2:Hg19::chr11:111224975..111224995,-#_46225bb3ba3a779cc2943ae002c2ad2fp@chr11:111224975..111224995, -
4.83e-105FFCP PHASE1:Hg19::chr11:111224975..111224995,-#_46225bb3ba3a779cc2943ae002c2ad2fp@chr11:111224975..111224995, -
7.41e-105FFCP PHASE1:Hg19::chr11:111225158..111225201,+#_d8060d5ad7398147e7a79c1b6bff3ca4p1@CU689419
7.41e-105FFCP PHASE2:Hg19::chr11:111225158..111225201,+#_d8060d5ad7398147e7a79c1b6bff3ca4p1@CU689419
1.77e-104FFCP PHASE2:Hg19::chr11:111225132..111225169,-#_043ecd3a342e539c9861d401ce00bb39p@chr11:111225132..111225169, -
1.77e-104FFCP PHASE1:Hg19::chr11:111225132..111225169,-#_043ecd3a342e539c9861d401ce00bb39p@chr11:111225132..111225169, -
6.11e-104FFCP PHASE2:Hg19::chr9:95491611..95491638,-#_1daa1d557ef41cf54b8a60401c9566a1p@chr9:95491611..95491638, -
6.11e-104FFCP PHASE1:Hg19::chr9:95491611..95491638,-#_1daa1d557ef41cf54b8a60401c9566a1-, p@chr9:95491611..95491638
5.34e-103FFCP PHASE2:Hg19::chr8:110535027..110535055,+#_826cf9ecbb110827960a8b96f965af4cp2@PKHD1L1
5.34e-103FFCP PHASE1:Hg19::chr8:110535027..110535055,+#_826cf9ecbb110827960a8b96f965af4cp2@PKHD1L1
7.65e-103FFCP PHASE1:Hg19::chr14:106321710..106321722,-#_bfbe39fabe75e0532a0d94195df42426p3@FJ197674
7.65e-103FFCP PHASE2:Hg19::chr14:106321710..106321722,-#_bfbe39fabe75e0532a0d94195df42426p3@FJ197674
6.14e-102FFCP PHASE1:Hg19::chr19:35837510..35837514,+#_da5034cb558a9b4584a6f29842c63db0p@chr19:35837510..35837514, +
6.14e-102FFCP PHASE2:Hg19::chr19:35837510..35837514,+#_da5034cb558a9b4584a6f29842c63db0p@chr19:35837510..35837514, +
1.06e-101FFCP PHASE1:Hg19::chr11:111225198..111225226,-#_f0eac9f91487ae39172359b4a126a5a2p@chr11:111225198..111225226, -
1.06e-101FFCP PHASE2:Hg19::chr11:111225198..111225226,-#_f0eac9f91487ae39172359b4a126a5a2p@chr11:111225198..111225226, -
1.28e-101FFCP PHASE1:Hg19::chr14:106322154..106322163,-#_d284cac67b8071a2661a06199a299616p3@AJ294734
1.28e-101FFCP PHASE2:Hg19::chr14:106322154..106322163,-#_d284cac67b8071a2661a06199a299616p3@AJ294734