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DOID:3119

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Name:gastrointestinal system cancer
Namespace:FANTOM
Definition:"An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
Xrefs:
links:

ICD9CM:239.0
MSH:D004067
SNOMEDCT_2010_1_31:126768004
SNOMEDCT_2010_1_31:128348002
SNOMEDCT_2010_1_31:128415001
SNOMEDCT_2010_1_31:189527000
SNOMEDCT_2010_1_31:276806006
SNOMEDCT_2010_1_31:367543008
SNOMEDCT_2010_1_31:428905002
SNOMEDCT_2010_1_31:93811007
UMLS_CUI:C0012243
UMLS_CUI:C0017185

UMLS_CUI:C0685938
Synonyms: "digestive system cancer" EXACT []
"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890]
"GI tumor" EXACT [NCI2004_11_17:C3052]
Alt_id: DOID:4945
DOID:8377

Ontology association

Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.



link to ontology dataset


data

Parents

is_a:DOID:0050686(organ system cancer)



Children


is a:DOID:0060119 (pharynx cancer),FF:0100797 (colonic cancer cell line),DOID:10155 (intestinal cancer),FF:10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB),DOID:10534 (stomach cancer),FF:10628-108H7 (),DOID:3571 (liver cancer),DOID:8618 (oral cavity cancer)


Ontology Tree: Loaded from BioPortal

FF samples

Human (Homo sapiens) Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with DOID:3119 (gastrointestinal system cancer), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
1.76e-45FFCP PHASE2:Hg19::chr7:13545393..13545395,+#_3a801c9486010a9a25fd6e084cea2858p@chr7:13545393..13545395, +
1.76e-45FFCP PHASE1:Hg19::chr7:13545393..13545395,+#_3a801c9486010a9a25fd6e084cea2858p@chr7:13545393..13545395, +
1.46e-32FFCP PHASE1:Hg19::chr7:12997533..12997536,+#_703ebab38b9e55c2c0791f3c52fba433p@chr7:12997533..12997536, +
1.46e-32FFCP PHASE2:Hg19::chr7:12997533..12997536,+#_703ebab38b9e55c2c0791f3c52fba433p@chr7:12997533..12997536, +
2.02e-32FFCP PHASE2:Hg19::chr8:139755835..139755842,-#_6f4a0e38a1a70f9c4cef89df0692f9a2-, p@chr8:139755835..139755842
2.02e-32FFCP PHASE1:Hg19::chr8:139755835..139755842,-#_6f4a0e38a1a70f9c4cef89df0692f9a2p@chr8:139755835..139755842, -
5.55e-30FFCP PHASE2:Hg19::chr1:20813515..20813530,-#_0ae09fd3f37625f40f676543ce0e1306p@chr1:20813515..20813530, -
5.55e-30FFCP PHASE1:Hg19::chr1:20813515..20813530,-#_0ae09fd3f37625f40f676543ce0e1306p@chr1:20813515..20813530, -
2.55e-29FFCP PHASE2:Hg19::chr6:102247584..102247620,+#_7f4e093949e24eb0389cec8c1eb977abp@chr6:102247584..102247620, +
2.55e-29FFCP PHASE2:Hg19::chr16:1631093..1631103,-#_7f4e093949e24eb0389cec8c1eb977abp@chr16:1631093..1631103, -
2.55e-29FFCP PHASE2:Hg19::chr2:163942394..163942398,+#_7f4e093949e24eb0389cec8c1eb977abp@chr2:163942394..163942398, +
2.55e-29FFCP PHASE2:Hg19::chr7:27282288..27282293,-#_7f4e093949e24eb0389cec8c1eb977abp2@ENST00000519050
2.55e-29FFCP PHASE1:Hg19::chr17:63771073..63771114,-#_7f4e093949e24eb0389cec8c1eb977abp@chr17:63771073..63771114, -
2.55e-29FFCP PHASE1:Hg19::chr2:163942394..163942398,+#_7f4e093949e24eb0389cec8c1eb977abp@chr2:163942394..163942398, +
2.55e-29FFCP PHASE1:Hg19::chr16:1631093..1631103,-#_7f4e093949e24eb0389cec8c1eb977abp@chr16:1631093..1631103, -
2.55e-29FFCP PHASE1:Hg19::chr7:27282288..27282293,-#_7f4e093949e24eb0389cec8c1eb977abp2@ENST00000519050
2.55e-29FFCP PHASE2:Hg19::chr2:130067633..130067649,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:130067633..130067649, -
2.55e-29FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_7f4e093949e24eb0389cec8c1eb977abp@chr18:28860939..28860953, -
2.55e-29FFCP PHASE2:Hg19::chr7:13045950..13045959,+#_7f4e093949e24eb0389cec8c1eb977abp@chr7:13045950..13045959, +
2.55e-29FFCP PHASE2:Hg19::chr17:63771073..63771114,-#_7f4e093949e24eb0389cec8c1eb977abp@chr17:63771073..63771114, -
2.55e-29FFCP PHASE2:Hg19::chr2:158443804..158443809,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:158443804..158443809, -
2.55e-29FFCP PHASE1:Hg19::chr6:102247584..102247620,+#_7f4e093949e24eb0389cec8c1eb977abp@chr6:102247584..102247620, +
2.55e-29FFCP PHASE1:Hg19::chr20:2397889..2397925,+#_7f4e093949e24eb0389cec8c1eb977abp@chr20:2397889..2397925, +
2.55e-29FFCP PHASE1:Hg19::chr7:13045950..13045959,+#_7f4e093949e24eb0389cec8c1eb977abp@chr7:13045950..13045959, +
2.55e-29FFCP PHASE1:Hg19::chr2:158443804..158443809,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:158443804..158443809, -
2.55e-29FFCP PHASE2:Hg19::chr20:2397889..2397925,+#_7f4e093949e24eb0389cec8c1eb977abp@chr20:2397889..2397925, +
2.55e-29FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_7f4e093949e24eb0389cec8c1eb977abp@chr18:28860939..28860953, -
2.55e-29FFCP PHASE1:Hg19::chr2:130067633..130067649,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:130067633..130067649, -
1.85e-28FFCP PHASE1:Hg19::chr8:140614358..140614378,-#_22d048b72cb2af68de5664f918b7e726p1@KCNK9
1.85e-28FFCP PHASE2:Hg19::chr8:140614358..140614378,-#_22d048b72cb2af68de5664f918b7e726p1@KCNK9
1.19e-25FFCP PHASE1:Hg19::chr19:3068219..3068225,-#_69026c5fdaf3e98777a9e12c2d691d53p@chr19:3068219..3068225, -
1.19e-25FFCP PHASE2:Hg19::chr19:3068219..3068225,-#_69026c5fdaf3e98777a9e12c2d691d53p@chr19:3068219..3068225, -
1.27e-25FFCP PHASE1:Hg19::chr2:2850815..2850821,-#_58d0944087c6c9522789e92a42446e58p@chr2:2850815..2850821, -
1.27e-25FFCP PHASE2:Hg19::chr2:2850815..2850821,-#_58d0944087c6c9522789e92a42446e58p@chr2:2850815..2850821, -
1.37e-23FFCP PHASE2:Hg19::chr12:109747040..109747055,-#_7defa3350b2ec14f5772b10eeb43dc91p1@FOXN4
1.37e-23FFCP PHASE1:Hg19::chr12:109747040..109747055,-#_7defa3350b2ec14f5772b10eeb43dc91p1@FOXN4
5.56e-23FFCP PHASE1:Hg19::chr13:28494130..28494168,+#_e9a9bb14d484f82911a33d3df7e5cb3fp1@PDX1
5.56e-23FFCP PHASE2:Hg19::chr13:28494130..28494168,+#_e9a9bb14d484f82911a33d3df7e5cb3fp1@PDX1
7.83e-23FFCP PHASE2:Hg19::chr3:34281730..34281733,+#_bdf74c8f2acc057c2018381a2106615bp@chr3:34281730..34281733, +
7.83e-23FFCP PHASE1:Hg19::chr3:34281730..34281733,+#_bdf74c8f2acc057c2018381a2106615bp@chr3:34281730..34281733, +
1.46e-22FFCP PHASE1:Hg19::chr7:13524410..13524415,+#_c36bf6d289d40b78ba27baeece5d4fdbp@chr7:13524410..13524415, +
1.46e-22FFCP PHASE2:Hg19::chr7:13524410..13524415,+#_c36bf6d289d40b78ba27baeece5d4fdbp@chr7:13524410..13524415, +
5.6e-22FFCP PHASE2:Hg19::chr7:142457254..142457278,+#_03716795fd4355ffb5ddfdb3d179b31ep3@PRSS1
5.6e-22FFCP PHASE1:Hg19::chr7:142457254..142457278,+#_03716795fd4355ffb5ddfdb3d179b31ep3@PRSS1
5.79e-22FFCP PHASE1:Hg19::chr6:31683157..31683167,+#_34c26525943e207fc69e7b45375da1c9p3@LY6G6D
5.79e-22FFCP PHASE2:Hg19::chr6:31683157..31683167,+#_34c26525943e207fc69e7b45375da1c9p3@LY6G6D
6.21e-22FFCP PHASE2:Hg19::chr17:70614580..70614613,-#_a5f97c29276ba5be0e57cc4811ab8bd6p@chr17:70614580..70614613, -
6.21e-22FFCP PHASE1:Hg19::chr17:70614580..70614613,-#_a5f97c29276ba5be0e57cc4811ab8bd6p@chr17:70614580..70614613, -
6.67e-22FFCP PHASE2:Hg19::chr21:43815581..43815595,-#_ab2d05383d9c2b83cd114a05ea3d2d76p5@TMPRSS3
6.67e-22FFCP PHASE1:Hg19::chr21:43815581..43815595,-#_ab2d05383d9c2b83cd114a05ea3d2d76p5@TMPRSS3
7.17e-22FFCP PHASE2:Hg19::chr1:163025530..163025535,-#_85f1471e7fa7966f3660e4ee98110a79p@chr1:163025530..163025535, -
7.17e-22FFCP PHASE1:Hg19::chr1:163025530..163025535,-#_85f1471e7fa7966f3660e4ee98110a79-, p@chr1:163025530..163025535
8.27e-22FFCP PHASE2:Hg19::chr1:163025442..163025452,-#_2afd870e8fb69f6e0e185fec006b0a0fp@chr1:163025442..163025452, -
8.27e-22FFCP PHASE1:Hg19::chr1:163025442..163025452,-#_2afd870e8fb69f6e0e185fec006b0a0fp@chr1:163025442..163025452, -
4.85e-21FFCP PHASE1:Hg19::chr7:13447097..13447101,+#_0bb5e9a5e4671e970e60d72db0fdf507p@chr7:13447097..13447101, +
4.85e-21FFCP PHASE2:Hg19::chr7:13447097..13447101,+#_0bb5e9a5e4671e970e60d72db0fdf507p@chr7:13447097..13447101, +
6.72e-21FFCP PHASE2:Hg19::chr13:72358093..72358097,-#_d16b04437f2ee582512b8fb88ed688e3p@chr13:72358093..72358097, -
6.72e-21FFCP PHASE1:Hg19::chr13:72358093..72358097,-#_d16b04437f2ee582512b8fb88ed688e3p@chr13:72358093..72358097, -
5.89e-20FFCP PHASE2:Hg19::chr7:19417679..19417693,+#_c662d2b57ec2d6c67be125d4675643c0p@chr7:19417679..19417693, +
5.89e-20FFCP PHASE1:Hg19::chr7:19417679..19417693,+#_c662d2b57ec2d6c67be125d4675643c0p@chr7:19417679..19417693, +
5.89e-20FFCP PHASE2:Hg19::chr17:27382155..27382164,+#_c662d2b57ec2d6c67be125d4675643c0p@chr17:27382155..27382164, +
5.89e-20FFCP PHASE1:Hg19::chr2:130067654..130067664,-#_c662d2b57ec2d6c67be125d4675643c0p@chr2:130067654..130067664, -
5.89e-20FFCP PHASE1:Hg19::chr6:1054763..1054800,-#_c662d2b57ec2d6c67be125d4675643c0p@chr6:1054763..1054800, -
5.89e-20FFCP PHASE2:Hg19::chr6:1054763..1054800,-#_c662d2b57ec2d6c67be125d4675643c0p@chr6:1054763..1054800, -
5.89e-20FFCP PHASE2:Hg19::chr2:130067654..130067664,-#_c662d2b57ec2d6c67be125d4675643c0p@chr2:130067654..130067664, -
5.89e-20FFCP PHASE2:Hg19::chr1:52442908..52442917,-#_c662d2b57ec2d6c67be125d4675643c0p9@RAB3B
5.89e-20FFCP PHASE2:Hg19::chr7:150499243..150499249,-#_c662d2b57ec2d6c67be125d4675643c0p@chr7:150499243..150499249, -
5.89e-20FFCP PHASE2:Hg19::chr11:90181744..90181756,+#_c662d2b57ec2d6c67be125d4675643c0p@chr11:90181744..90181756, +
5.89e-20FFCP PHASE2:Hg19::chr1:223853431..223853436,-#_c662d2b57ec2d6c67be125d4675643c0p4@CAPN8
5.89e-20FFCP PHASE1:Hg19::chr17:27382155..27382164,+#_c662d2b57ec2d6c67be125d4675643c0p@chr17:27382155..27382164, +
5.89e-20FFCP PHASE1:Hg19::chr11:90181744..90181756,+#_c662d2b57ec2d6c67be125d4675643c0p@chr11:90181744..90181756, +
5.89e-20FFCP PHASE1:Hg19::chr1:223853431..223853436,-#_c662d2b57ec2d6c67be125d4675643c0p4@CAPN8
5.89e-20FFCP PHASE1:Hg19::chr1:52442908..52442917,-#_c662d2b57ec2d6c67be125d4675643c0p9@RAB3B
5.89e-20FFCP PHASE1:Hg19::chr7:150499243..150499249,-#_c662d2b57ec2d6c67be125d4675643c0p@chr7:150499243..150499249, -
6.48e-20FFCP PHASE2:Hg19::chr7:13531282..13531289,+#_799802610c761be5176ee6e3509f267ep@chr7:13531282..13531289, +
6.48e-20FFCP PHASE2:Hg19::chr12:28004664..28004668,+#_799802610c761be5176ee6e3509f267ep@chr12:28004664..28004668, +
6.48e-20FFCP PHASE2:Hg19::chr1:165198157..165198181,-#_799802610c761be5176ee6e3509f267ep@chr1:165198157..165198181, -
6.48e-20FFCP PHASE2:Hg19::chr11:90181710..90181723,+#_799802610c761be5176ee6e3509f267e+, p@chr11:90181710..90181723
6.48e-20FFCP PHASE2:Hg19::chr10:102207688..102207707,+#_799802610c761be5176ee6e3509f267ep@chr10:102207688..102207707, +
6.48e-20FFCP PHASE1:Hg19::chr8:128908649..128908661,+#_799802610c761be5176ee6e3509f267ep@chr8:128908649..128908661, +
6.48e-20FFCP PHASE1:Hg19::chr8:128808502..128808513,+#_799802610c761be5176ee6e3509f267ep@chr8:128808502..128808513, +
6.48e-20FFCP PHASE1:Hg19::chr12:28004664..28004668,+#_799802610c761be5176ee6e3509f267ep@chr12:28004664..28004668, +
6.48e-20FFCP PHASE1:Hg19::chr11:90181710..90181723,+#_799802610c761be5176ee6e3509f267ep@chr11:90181710..90181723, +
6.48e-20FFCP PHASE1:Hg19::chr19:48876344..48876351,+#_799802610c761be5176ee6e3509f267ep@chr19:48876344..48876351, +
6.48e-20FFCP PHASE2:Hg19::chr8:128908649..128908661,+#_799802610c761be5176ee6e3509f267ep@chr8:128908649..128908661, +
6.48e-20FFCP PHASE2:Hg19::chr8:128808502..128808513,+#_799802610c761be5176ee6e3509f267ep@chr8:128808502..128808513, +
6.48e-20FFCP PHASE1:Hg19::chr7:13531282..13531289,+#_799802610c761be5176ee6e3509f267ep@chr7:13531282..13531289, +
6.48e-20FFCP PHASE1:Hg19::chr18:53165290..53165321,-#_799802610c761be5176ee6e3509f267ep@chr18:53165290..53165321, -
6.48e-20FFCP PHASE1:Hg19::chr1:165198157..165198181,-#_799802610c761be5176ee6e3509f267ep@chr1:165198157..165198181, -
6.48e-20FFCP PHASE2:Hg19::chr18:53165290..53165321,-#_799802610c761be5176ee6e3509f267ep@chr18:53165290..53165321, -
6.48e-20FFCP PHASE2:Hg19::chr19:48876344..48876351,+#_799802610c761be5176ee6e3509f267ep@chr19:48876344..48876351, +
6.48e-20FFCP PHASE2:Hg19::chr9:12159267..12159271,+#_799802610c761be5176ee6e3509f267ep@chr9:12159267..12159271, +
6.48e-20FFCP PHASE1:Hg19::chr10:102207688..102207707,+#_799802610c761be5176ee6e3509f267ep@chr10:102207688..102207707, +
6.48e-20FFCP PHASE1:Hg19::chr9:12159267..12159271,+#_799802610c761be5176ee6e3509f267ep@chr9:12159267..12159271, +
6.48e-20FFCP PHASE2:Hg19::chr2:50452322..50452343,+#_799802610c761be5176ee6e3509f267ep@chr2:50452322..50452343, +
6.48e-20FFCP PHASE1:Hg19::chr8:61761056..61761069,+#_799802610c761be5176ee6e3509f267ep@chr8:61761056..61761069, +
6.48e-20FFCP PHASE2:Hg19::chr8:61761056..61761069,+#_799802610c761be5176ee6e3509f267ep@chr8:61761056..61761069, +
6.48e-20FFCP PHASE1:Hg19::chr2:50452322..50452343,+#_799802610c761be5176ee6e3509f267ep@chr2:50452322..50452343, +
7.13e-20FFCP PHASE1:Hg19::chr8:20487277..20487282,+#_cd35a5c5b2ad16ae69209dcddd043599p@chr8:20487277..20487282, +
7.13e-20FFCP PHASE2:Hg19::chr8:128900203..128900207,+#_cd35a5c5b2ad16ae69209dcddd043599p@chr8:128900203..128900207, +