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DOID:0050686

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Name:organ system cancer
Namespace:FANTOM
Definition:"A cancer that is classified based on the organ it starts in." [url:http://cancerguide.org/basic.html]
Created by:snadendla
Creation date:2011-06-13T03:28:33Z

Ontology association
Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.

link to ontology dataset
data


Parents

is_a:DOID:162(cancer)



Children


is a:DOID:0050615 (respiratory system cancer),DOID:0060083 (immune system cancer),DOID:0060100 (musculoskeletal system cancer),DOID:0060122 (integumentary system cancer),DOID:170 (endocrine gland cancer),DOID:193 (reproductive organ cancer),DOID:3093 (nervous system cancer),DOID:3119 (gastrointestinal system cancer),DOID:3996 (urinary system cancer),DOID:5093 (thoracic cancer)


Ontology Tree: Loaded from BioPortal

FF samples

Human (Homo sapiens)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10408-106B3 (lung adenocarcinoma cell line:PC-14)
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
  • 10413-106B8 (glioma cell line:GI-1)
  • 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)

... further results Mouse (Mus musculus)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10408-106B3 (lung adenocarcinoma cell line:PC-14)
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
  • 10413-106B8 (glioma cell line:GI-1)
  • 10414-106B9 (maxillary sinus tumor cell line:HSQ-89)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0050686 (organ system cancer), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.38e-44FFCP PHASE2:Mm9::chr11:102331415..102331424,-#_65285b631ec8e691fc425814dcf2d967p9@Itga2b
5.38e-44FFCP PHASE2:Mm9::chr10:76688454..76688462,+#_65285b631ec8e691fc425814dcf2d967p@chr10:76688454..76688462, +
5.38e-44FFCP PHASE2:Mm9::chr1:180919481..180919491,-#_65285b631ec8e691fc425814dcf2d967p4@Smyd3
5.38e-44FFCP PHASE2:Mm9::chr10:76688464..76688474,+#_65285b631ec8e691fc425814dcf2d967p@chr10:76688464..76688474, +
5.38e-44FFCP PHASE1:Mm9::chr11:102331415..102331424,-#_65285b631ec8e691fc425814dcf2d967p9@Itga2b
5.38e-44FFCP PHASE1:Mm9::chr10:76688454..76688462,+#_65285b631ec8e691fc425814dcf2d967p@chr10:76688454..76688462, +
5.38e-44FFCP PHASE1:Mm9::chr10:76688464..76688474,+#_65285b631ec8e691fc425814dcf2d967p@chr10:76688464..76688474, +
5.38e-44FFCP PHASE1:Mm9::chr1:180919481..180919491,-#_65285b631ec8e691fc425814dcf2d967p4@Smyd3
7.84e-44FFCP PHASE2:Mm9::chr5:73305337..73305352,-#_692df3654ca27a8dd5299c8ed7b16e10-, p@chr5:73305337..73305352
7.84e-44FFCP PHASE1:Mm9::chr5:73305337..73305352,-#_692df3654ca27a8dd5299c8ed7b16e10p@chr5:73305337..73305352, -
4.79e-40FFCP PHASE1:Hg19::chr6:135513595..135513617,+#_ed865de4e8270344eabaddd1590e4f5dp4@MYB
4.79e-40FFCP PHASE2:Hg19::chr6:135513595..135513617,+#_ed865de4e8270344eabaddd1590e4f5dp4@MYB
4.3e-38FFCP PHASE1:Hg19::chr2:197504410..197504471,+#_ffbffa6d6a72381ab7b91b96b0a55359p1@CCDC150
4.3e-38FFCP PHASE2:Hg19::chr2:197504410..197504471,+#_ffbffa6d6a72381ab7b91b96b0a55359p1@CCDC150
7.41e-38FFCP PHASE1:Hg19::chr11:1372935..1372952,+#_8a80ee5033771369a6e0ad8692a57a1cp@chr11:1372935..1372952, +
7.41e-38FFCP PHASE2:Hg19::chr11:1372935..1372952,+#_8a80ee5033771369a6e0ad8692a57a1cp@chr11:1372935..1372952, +
2.52e-35FFCP PHASE2:Hg19::chrX:153991088..153991168,+#_1c5c0a174c081d5c665610633d5fdf02p1@DKC1
2.52e-35FFCP PHASE1:Hg19::chrX:153991088..153991168,+#_1c5c0a174c081d5c665610633d5fdf02p1@DKC1
1.76e-34FFCP PHASE1:Hg19::chr6:41513920..41513957,-#_06da1f80d7a37d2a8e3d7e6a717c7595p1@ENST00000414386
1.76e-34FFCP PHASE2:Hg19::chr6:41513920..41513957,-#_06da1f80d7a37d2a8e3d7e6a717c7595p1@ENST00000414386
4.66e-34FFCP PHASE2:Hg19::chr14:23120305..23120309,+#_1b72c822d2a7235e1ea2e9fbd6d67218p@chr14:23120305..23120309, +
4.66e-34FFCP PHASE1:Hg19::chr14:23120305..23120309,+#_1b72c822d2a7235e1ea2e9fbd6d67218p@chr14:23120305..23120309, +
1.36e-33FFCP PHASE2:Mm9::chr11:70246799..70246835,-#_1ce09872001252dca1a2235b12c6e8bap@chr11:70246799..70246835, -
1.36e-33FFCP PHASE1:Mm9::chr11:70246799..70246835,-#_1ce09872001252dca1a2235b12c6e8bap@chr11:70246799..70246835, -
2.03e-33FFCP PHASE2:Mm9::chr19:8798483..8798487,+#_5eb2fd793321ac0bee0ac8986210400ep1@ENSMUST00000082787
2.03e-33FFCP PHASE1:Mm9::chr2:156853485..156853494,-#_5eb2fd793321ac0bee0ac8986210400ep13@9830001H06Rik
2.03e-33FFCP PHASE1:Mm9::chrX:160480258..160480272,-#_5eb2fd793321ac0bee0ac8986210400ep@chrX:160480258..160480272, -
2.03e-33FFCP PHASE2:Mm9::chrX:160480258..160480272,-#_5eb2fd793321ac0bee0ac8986210400ep@chrX:160480258..160480272, -
2.03e-33FFCP PHASE1:Mm9::chr19:8798483..8798487,+#_5eb2fd793321ac0bee0ac8986210400ep1@ENSMUST00000082787
2.03e-33FFCP PHASE2:Mm9::chr2:156853485..156853494,-#_5eb2fd793321ac0bee0ac8986210400ep13@9830001H06Rik
2.62e-33FFCP PHASE1:Hg19::chr22:35627045..35627052,-#_61b3ebe3094780960c50cee7e9e36d6ep1@ENST00000423311
2.62e-33FFCP PHASE2:Hg19::chr22:35627045..35627052,-#_61b3ebe3094780960c50cee7e9e36d6ep1@ENST00000423311
3.55e-33FFCP PHASE1:Mm9::chr6:88785201..88785204,+#_d8b56478c34cacad67d52c59162772bfp@chr6:88785201..88785204, +
3.55e-33FFCP PHASE2:Mm9::chr6:88785201..88785204,+#_d8b56478c34cacad67d52c59162772bfp@chr6:88785201..88785204, +
4.33e-33FFCP PHASE2:Mm9::chr10:94309614..94309618,+#_0281bec43ce70fe4889c6a3a8609accep@chr10:94309614..94309618, +
4.33e-33FFCP PHASE2:Mm9::chr12:32681792..32681797,-#_0281bec43ce70fe4889c6a3a8609accep@chr12:32681792..32681797, -
4.33e-33FFCP PHASE1:Mm9::chr10:94309614..94309618,+#_0281bec43ce70fe4889c6a3a8609accep@chr10:94309614..94309618, +
4.33e-33FFCP PHASE1:Mm9::chr12:32681792..32681797,-#_0281bec43ce70fe4889c6a3a8609acce-, p@chr12:32681792..32681797
5.3e-33FFCP PHASE1:Hg19::chr3:121264813..121264846,-#_8255802812d0270ace3de92af7817696p1@POLQ
5.3e-33FFCP PHASE2:Hg19::chr3:121264813..121264846,-#_8255802812d0270ace3de92af7817696p1@POLQ
5.56e-33FFCP PHASE2:Hg19::chr8:124408652..124408712,-#_d00b11a8edef26551750eaa512fe019cp1@ATAD2
5.56e-33FFCP PHASE1:Hg19::chr8:124408652..124408712,-#_d00b11a8edef26551750eaa512fe019cp1@ATAD2
6.96e-33FFCP PHASE1:Hg19::chr18:19192235..19192337,+#_ca9b966b07899bd7fb53e3b35305b862p1@SNRPD1
6.96e-33FFCP PHASE2:Hg19::chr18:19192235..19192337,+#_ca9b966b07899bd7fb53e3b35305b862p1@SNRPD1
2.93e-32FFCP PHASE1:Hg19::chr4:154265825..154265875,+#_9ac8fcdefc18be3500c030e58a78330ap1@MND1
2.93e-32FFCP PHASE2:Hg19::chr4:154265825..154265875,+#_9ac8fcdefc18be3500c030e58a78330ap1@MND1
8.35e-32FFCP PHASE2:Hg19::chr6:135533394..135533403,+#_9f829c22357e438ca6e62c2760691497p@chr6:135533394..135533403, +
8.35e-32FFCP PHASE1:Hg19::chr6:135533394..135533403,+#_9f829c22357e438ca6e62c2760691497p@chr6:135533394..135533403, +
1.02e-31FFCP PHASE1:Hg19::chr11:125495862..125495882,+#_c3eb4dbbd38174c485fe1eccf3a0a6bep1@CHEK1
1.02e-31FFCP PHASE2:Hg19::chr11:125495862..125495882,+#_c3eb4dbbd38174c485fe1eccf3a0a6bep1@CHEK1
1.35e-31FFCP PHASE1:Hg19::chrX:153991175..153991226,+#_10e3ca8bff31be45949587c957f6f80dp2@DKC1
1.35e-31FFCP PHASE2:Hg19::chrX:153991175..153991226,+#_10e3ca8bff31be45949587c957f6f80dp2@DKC1
2.12e-31FFCP PHASE1:Hg19::chr17:38574169..38574180,-#_92844aa3829cee8c596d9f02fece6218p2@TOP2A
2.12e-31FFCP PHASE2:Hg19::chr17:38574169..38574180,-#_92844aa3829cee8c596d9f02fece6218p2@TOP2A
2.29e-31FFCP PHASE1:Hg19::chr1:154947126..154947147,+#_268ecb80cbcbf09a077b87bd2c03bc35p2@CKS1B
2.29e-31FFCP PHASE2:Hg19::chr1:154947126..154947147,+#_268ecb80cbcbf09a077b87bd2c03bc35p2@CKS1B
2.82e-31FFCP PHASE1:Hg19::chr15:40453204..40453304,+#_e53cbafc8df2e5636b114fa96c46e46ep1@BUB1B
2.82e-31FFCP PHASE2:Hg19::chr15:40453204..40453304,+#_e53cbafc8df2e5636b114fa96c46e46ep1@BUB1B
3.73e-31FFCP PHASE2:Hg19::chr2:70529150..70529179,-#_ba0e0d38c9ba42da3d9baec6adada094p1@FAM136A
3.73e-31FFCP PHASE1:Hg19::chr2:70529150..70529179,-#_ba0e0d38c9ba42da3d9baec6adada094p1@FAM136A
4.02e-31FFCP PHASE2:Hg19::chr3:179280702..179280769,+#_513fffec3ea7750a37c11bb08b6c6582p1@ACTL6A
4.02e-31FFCP PHASE1:Hg19::chr3:179280702..179280769,+#_513fffec3ea7750a37c11bb08b6c6582p1@ACTL6A
4.81e-31FFCP PHASE1:Hg19::chr17:41393591..41393606,+#_654b400a2735702310dcc2dfb5657c3bp@chr17:41393591..41393606, +
4.81e-31FFCP PHASE2:Hg19::chr17:41393591..41393606,+#_654b400a2735702310dcc2dfb5657c3bp@chr17:41393591..41393606, +
1.26e-30FFCP PHASE2:Hg19::chr1:214776516..214776565,+#_a677ddc3db1a54571c6beaac689af18fp1@CENPF
1.26e-30FFCP PHASE1:Hg19::chr1:214776516..214776565,+#_a677ddc3db1a54571c6beaac689af18fp1@CENPF
1.44e-30FFCP PHASE2:Hg19::chr17:41277372..41277418,-#_2fddfddd419b2d6f6106fb406cd214e9p1@BRCA1
1.44e-30FFCP PHASE1:Hg19::chr17:41277372..41277418,-#_2fddfddd419b2d6f6106fb406cd214e9p1@BRCA1
1.59e-30FFCP PHASE1:Hg19::chr4:57301645..57301675,-#_0e4d027910a29ed530404658594af835p2@PPAT
1.59e-30FFCP PHASE2:Hg19::chr4:57301645..57301675,-#_0e4d027910a29ed530404658594af835p2@PPAT
1.99e-30FFCP PHASE1:Hg19::chr22:22901636..22901715,-#_f13d97b6742b34a17e98c6ab8ced2e6cp1@PRAME
1.99e-30FFCP PHASE2:Hg19::chr22:22901636..22901715,-#_f13d97b6742b34a17e98c6ab8ced2e6cp1@PRAME
2.37e-30FFCP PHASE1:Hg19::chr4:185655212..185655260,-#_e9cd57d633552c37406e9d0bb31f648dp1@MLF1IP
2.37e-30FFCP PHASE2:Hg19::chr4:185655212..185655260,-#_e9cd57d633552c37406e9d0bb31f648dp1@MLF1IP
2.72e-30FFCP PHASE2:Hg19::chr2:70529180..70529217,-#_8e0be7bd25fb47f538f26925905fbbe0p2@FAM136A
2.72e-30FFCP PHASE1:Hg19::chr2:70529180..70529217,-#_8e0be7bd25fb47f538f26925905fbbe0p2@FAM136A
3.23e-30FFCP PHASE1:Hg19::chr17:38574125..38574168,-#_f0a362f500013fb62301a13901bc45adp1@TOP2A
3.23e-30FFCP PHASE2:Hg19::chr17:38574125..38574168,-#_f0a362f500013fb62301a13901bc45adp1@TOP2A
3.86e-30FFCP PHASE2:Hg19::chr1:200589859..200589887,-#_880ce44e6f10e2ba2bff1b4af9152386p1@KIF14
3.86e-30FFCP PHASE1:Hg19::chr1:200589859..200589887,-#_880ce44e6f10e2ba2bff1b4af9152386p1@KIF14
4.12e-30FFCP PHASE1:Hg19::chr1:46713405..46713452,+#_5fa6a84caee6edd38ef67bf00e288123p1@RAD54L
4.12e-30FFCP PHASE2:Hg19::chr1:46713405..46713452,+#_5fa6a84caee6edd38ef67bf00e288123p1@RAD54L
6.66e-30FFCP PHASE1:Mm9::chr11:104171122..104171127,+#_2dbe02d97ddb9048aeba52fa04ae6158p@chr11:104171122..104171127, +
6.66e-30FFCP PHASE2:Mm9::chr11:104171122..104171127,+#_2dbe02d97ddb9048aeba52fa04ae6158p@chr11:104171122..104171127, +
7.27e-30FFCP PHASE2:Hg19::chr7:105162652..105162709,-#_9b66c6c4540d5ce1ff8804acfd5f8506p1@PUS7
7.27e-30FFCP PHASE1:Hg19::chr7:105162652..105162709,-#_9b66c6c4540d5ce1ff8804acfd5f8506p1@PUS7
1.83e-29FFCP PHASE1:Hg19::chr6:135502472..135502489,+#_9e9040d9604b80e2dc6b93b799617849p3@MYB
1.83e-29FFCP PHASE2:Hg19::chr6:135502472..135502489,+#_9e9040d9604b80e2dc6b93b799617849p3@MYB
1.97e-29FFCP PHASE2:Hg19::chr15:41672357..41672421,+#_587a38a7cddead91f8f0365c91964e87p@chr15:41672357..41672421, +
1.97e-29FFCP PHASE1:Hg19::chr15:41672357..41672421,+#_587a38a7cddead91f8f0365c91964e87p@chr15:41672357..41672421, +
2.03e-29FFCP PHASE2:Mm9::chr11:79436622..79436627,-#_fe06aa258f9ee5c87f22314813ed6676p1@Gm11202
2.03e-29FFCP PHASE1:Mm9::chr11:79436622..79436627,-#_fe06aa258f9ee5c87f22314813ed6676p1@Gm11202
2.34e-29FFCP PHASE1:Hg19::chr10:58120996..58121039,-#_be386d87003b552e631ec3f5c02d5824p1@ZWINT
2.34e-29FFCP PHASE2:Hg19::chr10:58120996..58121039,-#_be386d87003b552e631ec3f5c02d5824p1@ZWINT
2.62e-29FFCP PHASE2:Hg19::chr4:154265784..154265819,+#_6eab4cf42b85fc672bfdc11f454d4d4ep2@MND1
2.62e-29FFCP PHASE1:Hg19::chr4:154265784..154265819,+#_6eab4cf42b85fc672bfdc11f454d4d4ep2@MND1
2.69e-29FFCP PHASE1:Hg19::chr12:102514019..102514035,+#_9e31a9098b95749f7ab2336195c7d568p3@C12orf48
2.69e-29FFCP PHASE2:Hg19::chr12:102514019..102514035,+#_9e31a9098b95749f7ab2336195c7d568p3@C12orf48
2.75e-29FFCP PHASE2:Hg19::chr20:57617831..57617909,-#_34dd3003a516034e15fb4789c3fc8a80p1@SLMO2
2.75e-29FFCP PHASE1:Hg19::chr20:57617831..57617909,-#_34dd3003a516034e15fb4789c3fc8a80p1@SLMO2