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UBERON:0000074

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Name:renal glomerulus
Namespace:FANTOM
Definition:"A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus]
Xrefs:
links:

AAO:0010388
BTO:0000530
EFO:0003667
EV:0100386
FMA:15624
[1]
[2]
[ 200px-Gray1130.svg.png 200px-Gray1130.svg.png]
MA:0001657
MESH:A.05.810.453.736.520
ncithesaurus:Glomerulus
TAO:0001288
XAO:0000146

ZFA:0001288
Synonyms: "glomerular capillary tuft" RELATED [ZFA:0001288]
"glomerular tuft" RELATED []
"glomerulus" BROAD []
"glomerulus renis" RELATED LATIN [Wikipedia:Glomerulus]
"malphigian glomerulus" RELATED [BTO:0000530]
"renal corpuscle" RELATED []
Comments:ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. TODO - split glomerulus and glomerular tuft? DONE. GUDMAP: 'Together, the Bowman遯カ蜀ア capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule?
Subset: vertebrate_core
Created by:Melissa Haendel
Creation date:2009-06-18T09:26:37Z

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0005749(glomerular tuft)
part_of:UBERON:0001229(renal corpuscle)



Children

part of:CL:0002188 (glomerular endothelial cell),UBERON:0002319 (mesangium),CL:1000746 (glomerular cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000074 (renal glomerulus), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_4d7bb32267b0b9fb2a444b7a94d53bd5p@chr2:120409486..120409492, +
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_4d7bb32267b0b9fb2a444b7a94d53bd5p@chr2:120409486..120409492, +
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_97659a7127319b72d9dbe5a7f616805ep1@ENST00000413103
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_97659a7127319b72d9dbe5a7f616805ep1@ENST00000413103
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_4a9985f04e03bfa4e388e4a2c72a694ap@chr17:79426453..79426462, +
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_4a9985f04e03bfa4e388e4a2c72a694ap@chr17:79426453..79426462, +
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_71d555d3b0dee30fe005fea652dc57e6p@chr8:77557753..77557755, -
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_71d555d3b0dee30fe005fea652dc57e6p@chr8:77557753..77557755, -
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_30edbc2fbcd503ad7e75d1193e96a5efp6@TINAGL1
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_30edbc2fbcd503ad7e75d1193e96a5efp6@TINAGL1
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_18088851ade55b5298aa2c0484dcca37p9@FURIN
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_18088851ade55b5298aa2c0484dcca37p9@FURIN
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_67acd62f283b10e4a12b18d74e0c8ee0p7@LRRN4
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_67acd62f283b10e4a12b18d74e0c8ee0p7@LRRN4
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_733f9dc9e8b9f2d83638ada760f03d76+, p@chr1:42777312..42777314
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_733f9dc9e8b9f2d83638ada760f03d76p7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_733f9dc9e8b9f2d83638ada760f03d76p@chr2:26700331..26700340, -
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_733f9dc9e8b9f2d83638ada760f03d76p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_733f9dc9e8b9f2d83638ada760f03d76p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_733f9dc9e8b9f2d83638ada760f03d76p7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_733f9dc9e8b9f2d83638ada760f03d76p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_733f9dc9e8b9f2d83638ada760f03d76p@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_733f9dc9e8b9f2d83638ada760f03d76p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_733f9dc9e8b9f2d83638ada760f03d76+, p@chr22:47030082..47030087
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_a2916e13c10b3c76d9082e1de3869b8fp@chr10:3477893..3477912, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_a2916e13c10b3c76d9082e1de3869b8fp@chr10:3477893..3477912, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_0c95fa40010870ab14a9e92fbbef39e3p@chr1:172926077..172926120, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_0c95fa40010870ab14a9e92fbbef39e3p@chr1:172926077..172926120, -
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_87b777cedf25092d016c0552504ed12cp5@APLN
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_87b777cedf25092d016c0552504ed12cp5@APLN
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_6115a428bb677e4243c3a9f2f9d6f4c1p@chr2:693380..693398, +
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_6115a428bb677e4243c3a9f2f9d6f4c1p@chr2:693380..693398, +
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_3596fccbe3f03a8ebc4ba3cea360941ap@chr6:84849252..84849259, +
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_3596fccbe3f03a8ebc4ba3cea360941ap@chr6:84849252..84849259, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_3596fccbe3f03a8ebc4ba3cea360941ap@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_3596fccbe3f03a8ebc4ba3cea360941ap@chr2:133426030..133426041, -
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_5a11f540c09519e76589bbea4a0d900ep23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_5a11f540c09519e76589bbea4a0d900ep10@TRIL
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_5a11f540c09519e76589bbea4a0d900ep23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_5a11f540c09519e76589bbea4a0d900ep10@TRIL
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_c69b8f50c48e31ab6dd3a1d32b2060d8p@chr15:85403302..85403304, +
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_c69b8f50c48e31ab6dd3a1d32b2060d8+, p@chr7:4051097..4051112
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_c69b8f50c48e31ab6dd3a1d32b2060d8p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_c69b8f50c48e31ab6dd3a1d32b2060d8p@chr15:85403302..85403304, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_a0324e5c27913e3e5ccaf2be03ebcfcep@chr16:2141529..2141537, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_a0324e5c27913e3e5ccaf2be03ebcfcep@chr16:2141529..2141537, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_0b956ebd98481844f07d4d38dd9183acp@chr5:74244100..74244117, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_0b956ebd98481844f07d4d38dd9183acp@chr5:74244100..74244117, +
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_1f987939d8ad71f759f0735c39eeb874p@chr5:148651758..148651769, -
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_1f987939d8ad71f759f0735c39eeb874p@chr5:148651758..148651769, -
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_ee2df898c8d0a199de08eb57871e65b9p@chr16:86768403..86768437, +
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_ee2df898c8d0a199de08eb57871e65b9p@chr16:86768403..86768437, +
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_576a0f2ec94151fab3108586ea9e5184-, p@chr17:2076002..2076026
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_576a0f2ec94151fab3108586ea9e5184p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_92f3ba778dd5ee2c8f4c475a7b022437p3@FAM167B
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_92f3ba778dd5ee2c8f4c475a7b022437p3@FAM167B
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_d106ab53c243d5e82e77ba322565d5d9p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_d106ab53c243d5e82e77ba322565d5d9p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_24e37e2c0cceba8385f7b4670d941993p1@ENST00000487339
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_24e37e2c0cceba8385f7b4670d941993p1@ENST00000487339
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_c6867c006a2cf50541037386f72e1cd2p@chr19:47231340..47231383, -
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_c6867c006a2cf50541037386f72e1cd2p@chr19:47231340..47231383, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_fe561ea1d4f590d60150e7d16136051cp@chr19:1826957..1826984, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_fe561ea1d4f590d60150e7d16136051cp@chr19:1826957..1826984, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_fd92ee6c214b52445766a94483f7e594p@chr4:38057595..38057624, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_fd92ee6c214b52445766a94483f7e594p@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_2d8d19251ba0293d9080956690525156p@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_2d8d19251ba0293d9080956690525156p@chr2:133426106..133426117, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_333ef571f59da48992ec5476937e15dfp@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_333ef571f59da48992ec5476937e15dfp@chr15:36653709..36653720, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_333ef571f59da48992ec5476937e15dfp@chr9:35753821..35753835, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_333ef571f59da48992ec5476937e15dfp@chr15:36653709..36653720, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_c510e71931ea3197e9eb2d52bc4ab041p@chr4:145568170..145568180, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_c510e71931ea3197e9eb2d52bc4ab041p@chr4:145568170..145568180, -
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_2c6ea6663e56382ce8aa86608b09866ep1@WDR87
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_2c6ea6663e56382ce8aa86608b09866ep1@WDR87
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_cfeadbad5e4c98a42b21b631a1b759bep@chr14:91270270..91270281, -
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_cfeadbad5e4c98a42b21b631a1b759bep@chr14:91270270..91270281, -
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_682c6ac922ea900a70c2691c8c7eb067p6@ACVRL1
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_682c6ac922ea900a70c2691c8c7eb067p6@ACVRL1
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_104da4dd9fdcb9be85ecb2ee263e2b05p@chr3:43538305..43538325, -
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_104da4dd9fdcb9be85ecb2ee263e2b05p@chr3:43538305..43538325, -
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_b49e28446bfa9eff58600698b6b65be5p@chr17:171147..171161, +
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_b49e28446bfa9eff58600698b6b65be5p@chr17:171147..171161, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_15a2fe930cb511c22d7f767f86f9a5f1p@chr1:22211913..22211920, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_15a2fe930cb511c22d7f767f86f9a5f1p@chr1:22211913..22211920, +
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3704e2ce1e7130bd1c46bfb0e3718dccp7@HOXA10
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3704e2ce1e7130bd1c46bfb0e3718dccp7@HOXA10
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_7be61c06df7fd3ca4ec7ff76b9141200p3@TINAGL1
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_7be61c06df7fd3ca4ec7ff76b9141200p3@TINAGL1
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_2fe4b0fcc4156832096f8130c2320380p17@CTGF
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_2fe4b0fcc4156832096f8130c2320380p17@CTGF
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_78b62f5748371434c91c898b09c8dca2p5@AP2A2
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_78b62f5748371434c91c898b09c8dca2p5@AP2A2
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_1606ac664f69b9e814bfd5c53bafc807p@chr19:42007093..42007107, -
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_1606ac664f69b9e814bfd5c53bafc807p@chr19:42007093..42007107, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_7f66d6c54689ffb4afcb079c0def1444p@chrX:128781853..128781866, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_7f66d6c54689ffb4afcb079c0def1444p@chrX:128781853..128781866, -
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_2a3816c46b6d9ddb4c80866bcc383355p@chr16:86604624..86604648, +
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_2a3816c46b6d9ddb4c80866bcc383355p@chr16:86604624..86604648, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.