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UBERON:0000365

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Name:urothelium
Namespace:FANTOM
Definition:"The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium]
Xrefs:
links:

BTO:0003906
EMAPA:28089
FMA:67695
GAID:935
[ Harnblase_Urothel.png Harnblase_Urothel.png]
MESH:A.10.272.850
ncithesaurus:Urothelium

SCTID:57789003
Synonyms: "uroepithelium" EXACT [FMA:67695]
Comments:consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'
Alt_id: UBERON:BTO_0001245-FMA_67695

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005910(transitional epithelium),UBERON:0006554(urinary system structure)
part_of:UBERON:0001008(renal system)



Children

is a:UBERON:0004645 (urinary bladder urothelium)
part of:CL:0000731 (urothelial cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000365 (urothelium), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.18e-79FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_1869a6c7c2cff2f0a7b11d3192d915edp9@BTBD16
3.18e-79FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_1869a6c7c2cff2f0a7b11d3192d915edp9@BTBD16
3.49e-79FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_3d4d5f7e03458e817cbadfa9e969e7b8p@chr21:39627877..39627884, +
3.49e-79FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_3d4d5f7e03458e817cbadfa9e969e7b8p@chr21:39627877..39627884, +
1.81e-70FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_44c3cd45542c084abe3c81aed759d708p6@BTBD16
1.81e-70FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_44c3cd45542c084abe3c81aed759d708p6@BTBD16
4.32e-64FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_9d5216b7baa5f9f85e8ba4547372f9fdp16@PTHLH
4.32e-64FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_9d5216b7baa5f9f85e8ba4547372f9fdp16@PTHLH
7.01e-64FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_52db06b26fabc052cf64b5044180b711-, p@chr5:61213179..61213189
7.01e-64FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_52db06b26fabc052cf64b5044180b711p@chr5:61213179..61213189, -
1.35e-59FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_97fe39de58887d2ca0841cb1aad6f0c1p@chrX:102977640..102977644, -
1.35e-59FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_97fe39de58887d2ca0841cb1aad6f0c1p@chrX:102977640..102977644, -
1.65e-59FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_4d07e68aa1ceb0439ec5a58f0d2e106fp4@IFNK
1.65e-59FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_4d07e68aa1ceb0439ec5a58f0d2e106fp4@IFNK
4.82e-58FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_1912bc9a02e770de546eb5852e2841b0p@chr1:40492754..40492762, +
4.82e-58FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_1912bc9a02e770de546eb5852e2841b0p@chr1:40492754..40492762, +
5.58e-58FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_b9af23c33fe7f3f990ef97826d94e92ep@chr10:3954276..3954287, +
5.58e-58FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_b9af23c33fe7f3f990ef97826d94e92ep@chr10:3954276..3954287, +
7.03e-54FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_0f1fead95c2953e01873c3ec380761a7p17@PTHLH
7.03e-54FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_0f1fead95c2953e01873c3ec380761a7p17@PTHLH
2.19e-53FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_f5a28b73ba8a69043340ddbadca5e261p38@PTK2
2.19e-53FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_f5a28b73ba8a69043340ddbadca5e261p38@PTK2
1.15e-51FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_05d58ee83060de640bfe4a726a1500d0p@chr5:61213127..61213133, -
1.15e-51FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_05d58ee83060de640bfe4a726a1500d0p@chr5:61213127..61213133, -
2.73e-51FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_92bf69a66a7f983b1a2556e4701dfa83p@chr21:44168074..44168079, +
2.73e-51FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_92bf69a66a7f983b1a2556e4701dfa83p@chr21:44168074..44168079, +
3.85e-51FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_0c84858ea8c4c50135ccfeb0bc479b3ap@chr4:125341514..125341526, -
3.85e-51FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_0c84858ea8c4c50135ccfeb0bc479b3ap@chr4:125341514..125341526, -
2.51e-49FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_236ee3cc42ada786119bb5adb47d4c0ap@chr10:127763979..127763984, +
2.51e-49FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_236ee3cc42ada786119bb5adb47d4c0ap@chr10:127763979..127763984, +
1.78e-45FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_970f4604947b44625bcf0265065a7277p@chr11:127965855..127965866, +
1.78e-45FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_970f4604947b44625bcf0265065a7277p@chr11:127965855..127965866, +
2.51e-45FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_ec71ea121e46c0c1a1ee6546fd55c075p@chr19:15065111..15065171, -
2.51e-45FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_ec71ea121e46c0c1a1ee6546fd55c075p@chr19:15065111..15065171, -
2.12e-43FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_3b1f8ec3847e296bb0fddedc645dc33cp3@BTBD16
2.12e-43FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_3b1f8ec3847e296bb0fddedc645dc33cp3@BTBD16
6.95e-43FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_e0a7ade7ee473a7b0897daaf0674cc55p13@MTHFD1L
6.95e-43FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_e0a7ade7ee473a7b0897daaf0674cc55p13@MTHFD1L
2.26e-42FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_f1585a0e9eee0da30bfbfe8b16b31ef7p@chr7:2019948..2019961, -
2.26e-42FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_f1585a0e9eee0da30bfbfe8b16b31ef7p@chr7:2019948..2019961, -
1.16e-40FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_0732606a1634d2c8734d28e475aa2d3dp30@AGAP3
1.16e-40FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_0732606a1634d2c8734d28e475aa2d3dp30@AGAP3
1.29e-40FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_cd82bf974bf8f4dd87fda3d2f35804a3p@chr2:31560793..31560814, -
1.29e-40FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_cd82bf974bf8f4dd87fda3d2f35804a3p@chr2:31560793..31560814, -
1.48e-40FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_34432925880934f8cb5ce5818513ad5ep@chr15:101282110..101282113, +
1.48e-40FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_34432925880934f8cb5ce5818513ad5ep2@ENST00000427341
1.48e-40FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_34432925880934f8cb5ce5818513ad5ep2@ENST00000427341
1.48e-40FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_34432925880934f8cb5ce5818513ad5ep@chr15:101282110..101282113, +
1.7e-40FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_967ce8b69718b4a22e369c9d451ec420p@chr13:20934450..20934456, +
1.7e-40FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_967ce8b69718b4a22e369c9d451ec420p@chr13:20934450..20934456, +
2.71e-40FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_97ddb14fe300406a0582f5fb5c1b5c07p@chr14:85935018..85935023, -
2.71e-40FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_97ddb14fe300406a0582f5fb5c1b5c07p@chr14:85935018..85935023, -
3.31e-40FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_f961b54373f71adac0b41fb1f62ced37p@chr9:21564382..21564387, -
3.31e-40FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_f961b54373f71adac0b41fb1f62ced37p@chr9:113802868..113802878, -
3.31e-40FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_f961b54373f71adac0b41fb1f62ced37-, p@chr9:21564382..21564387
3.31e-40FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_f961b54373f71adac0b41fb1f62ced37p@chr9:113802868..113802878, -
4.05e-40FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_0ba3c9878eb1b6bbda8d999d4dfd05e4p@chr19:43965689..43965700, -
4.05e-40FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_0ba3c9878eb1b6bbda8d999d4dfd05e4p@chr19:43965689..43965700, -
7.43e-40FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_2e8a8cc5a131f1c00eb8fd89ab9b5f64p32@FRMD6
7.43e-40FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_2e8a8cc5a131f1c00eb8fd89ab9b5f64p32@FRMD6
1.58e-39FFCP PHASE1:Hg19::chr12:47472684..47472703,-#_ef089a55ca7adffd7328b4256813a1cfp12@AMIGO2
1.58e-39FFCP PHASE2:Hg19::chr12:47472684..47472703,-#_ef089a55ca7adffd7328b4256813a1cfp12@AMIGO2
1.72e-38FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_28c07cb3dbdef1becd7a7b252a181284p@chr21:45020721..45020728, -
1.72e-38FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_28c07cb3dbdef1becd7a7b252a181284-, p@chr21:45020721..45020728
2.51e-38FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_8872f72acf57021079efb01f2f3d7810p@chr8:143814087..143814102, -
2.51e-38FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_8872f72acf57021079efb01f2f3d7810p@chr8:143814087..143814102, -
7.44e-37FFCP PHASE1:Hg19::chr9:21564331..21564360,-#_fd9a60837bd99774db24e9f3397fa8f3p@chr9:21564331..21564360, -
7.44e-37FFCP PHASE2:Hg19::chr9:21564331..21564360,-#_fd9a60837bd99774db24e9f3397fa8f3p@chr9:21564331..21564360, -
2.0e-36FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_c78f29c1d255323b52396fb9d27a7b1ep@chr1:183192299..183192310, +
2.0e-36FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_c78f29c1d255323b52396fb9d27a7b1ep@chr1:183192299..183192310, +
2.26e-36FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_4de95e6e13059806212f2040e6dbee0ep@chr2:20402306..20402318, -
2.26e-36FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_4de95e6e13059806212f2040e6dbee0ep@chr4:125341479..125341498, -
2.26e-36FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_4de95e6e13059806212f2040e6dbee0ep@chr4:125341479..125341498, -
2.26e-36FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_4de95e6e13059806212f2040e6dbee0ep@chr2:20402306..20402318, -
3.25e-36FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_aa57c0c143839567f33e94bc97cc37bdp1@IFNK
3.25e-36FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_aa57c0c143839567f33e94bc97cc37bdp1@IFNK
3.66e-36FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_646abc375e95eb99e0e7e7c81a412189p@chr1:99387558..99387571, -
3.66e-36FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_646abc375e95eb99e0e7e7c81a412189p6@GJB6
3.66e-36FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_646abc375e95eb99e0e7e7c81a412189p6@GJB6
3.66e-36FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_646abc375e95eb99e0e7e7c81a412189p@chr1:99387558..99387571, -
3.13e-35FFCP PHASE1:Hg19::chr20:56273255..56273292,-#_5a48352e7f344ff187b4e95072209072p@chr20:56273255..56273292, -
3.13e-35FFCP PHASE2:Hg19::chr20:56273255..56273292,-#_5a48352e7f344ff187b4e95072209072-, p@chr20:56273255..56273292
6.51e-35FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_642870796429826c8531cfff5448ccc6p2@BTBD16
6.51e-35FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_642870796429826c8531cfff5448ccc6p2@BTBD16
1.79e-33FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_b50a63e40bb391fd710e6f5a46a7e1c4p@chr1:183212642..183212654, +
1.79e-33FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_b50a63e40bb391fd710e6f5a46a7e1c4p@chr1:183212642..183212654, +
3.1e-33FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_f01c9f572b8fa2c1bbf05a3284313085p19@NDST1
3.1e-33FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_f01c9f572b8fa2c1bbf05a3284313085p@chr6:44096519..44096530, -
3.1e-33FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_f01c9f572b8fa2c1bbf05a3284313085p19@NDST1
3.1e-33FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_f01c9f572b8fa2c1bbf05a3284313085p@chr6:44096519..44096530, -
4.16e-33FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_a895262b3b677fbdbc8d0084b11e336fp@chr13:20762566..20762577, -
4.16e-33FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_a895262b3b677fbdbc8d0084b11e336fp@chr13:20762566..20762577, -
6.26e-33FFCP PHASE1:Hg19::chr3:13921498..13921503,-#_af355c2ff634517ba907091693f80634p6@WNT7A
6.26e-33FFCP PHASE2:Hg19::chr3:13921498..13921503,-#_af355c2ff634517ba907091693f80634p6@WNT7A
9.4e-33FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_954e2fdace37c82261231857ef8cd097p@chr5:146263947..146263959, -
9.4e-33FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_954e2fdace37c82261231857ef8cd097p@chr5:146263947..146263959, -
1.23e-32FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_2b491b1d8a8234d7ccce009ec547c1acp25@KCNJ15
1.23e-32FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_2b491b1d8a8234d7ccce009ec547c1acp25@KCNJ15
1.8e-32FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_1f1edb9ada1818fc816d7f7491bd118dp@chr1:183204832..183204840, +
1.8e-32FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_1f1edb9ada1818fc816d7f7491bd118dp@chr1:183204832..183204840, +