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UBERON:0000966

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Name:retina
Namespace:FANTOM
Definition:"The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator]
Xrefs:
links:

AAO:0010352
BTO:0001175
EFO:0000832
EHDAA2:0001627
EHDAA:4757
EMAPA:17168
EV:0100348
FMA:58301
GAID:755
[ Human_eye_cross-sectional_view_grayscale.png Human_eye_cross-sectional_view_grayscale.png]
[ 200px-Human_eye_cross-sectional_view_grayscale.png 200px-Human_eye_cross-sectional_view_grayscale.png]
MA:0000276
MAT:0000142
MESH:A.09.371.729
MIAA:0000142
ncithesaurus:Retina
NIF_GrossAnatomy:birnlex_1153
NIF_GrossAnatomy:birnlex_1156
OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
SCTID:181171005
TAO:0000152
VHOG:0000229
XAO:0000009

ZFA:0000152
Synonyms: "inner layer of eyeball" EXACT []
"Netzhaut" RELATED [BTO:0001175]
"tunica interna of eyeball" EXACT []
Comments:Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods
Alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005388(photoreceptor array)
develops_from:UBERON:0003072(optic cup)
part_of:UBERON:0001802(posterior segment of eyeball)



Children

is a:FF:10440-106E8 ()
derives from:FF:0010030 (human retina - adult sample),FF:0102919 (retinoblastoma cell line sample)
part of:UBERON:0001781 (layer of retina),CL:0002585 (retinal blood vessel endothelial cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000966 (retina), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.07e-130FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23p2@SERPINE3
1.07e-130FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23p@chr13:99135322..99135327, -
1.07e-130FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23p2@SERPINE3
1.07e-130FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23p@chr13:99135322..99135327, -
5.17e-105FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13p@chr11:109990513..109990520, -
5.17e-105FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13p@chr11:109990513..109990520, -
1.51e-104FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0p@chr5:70308745..70308754, -
1.51e-104FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0p@chr5:70308745..70308754, -
4.11e-102FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4p@chr3:69928404..69928418, +
4.11e-102FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4p@chr3:69928404..69928418, +
1.83e-98FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29p9@C11orf9
1.83e-98FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29p9@C11orf9
1.83e-98FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29p@chr1:147150847..147150854, -
1.83e-98FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29p@chr1:147150847..147150854, -
1.83e-98FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29p5@ENST00000437916
1.83e-98FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29p5@ENST00000437916
7.0e-88FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ecp2@C11orf9
7.0e-88FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ecp2@C11orf9
1.37e-87FFCP PHASE1:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0fp@chr17:932340..932343, -
1.37e-87FFCP PHASE2:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0fp@chr17:932340..932343, -
1.22e-75FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6p1@SERPINE3
1.22e-75FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6p1@SERPINE3
2.63e-75FFCP PHASE2:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143p17@TTLL4
2.63e-75FFCP PHASE1:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143p17@TTLL4
2.83e-66FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90p3@ENST00000558781
2.83e-66FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90p@chr5:149250331..149250335, -
2.83e-66FFCP PHASE1:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90p@chr11:639444..639447, +
2.83e-66FFCP PHASE2:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90p@chr11:639444..639447, +
2.83e-66FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90p@chr2:165170873..165170919, -
2.83e-66FFCP PHASE1:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90p@chr12:208274..208283, +
2.83e-66FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90p@chr5:149250331..149250335, -
2.83e-66FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90+, p@chr18:39859562..39859566
2.83e-66FFCP PHASE1:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90p@chr22:41734286..41734290, +
2.83e-66FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90p@chr18:39859562..39859566, +
2.83e-66FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90p@chr13:51913893..51913901, +
2.83e-66FFCP PHASE1:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90p@chr12:208292..208304, +
2.83e-66FFCP PHASE2:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90p9@INPP5K
2.83e-66FFCP PHASE1:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90p@chr13:99135420..99135443, -
2.83e-66FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90p@chr2:165170873..165170919, -
2.83e-66FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90p@chr21:45724075..45724081, +
2.83e-66FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90p@chr3:39827273..39827281, +
2.83e-66FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90p@chr3:39827273..39827281, +
2.83e-66FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90p3@ENST00000558781
2.83e-66FFCP PHASE2:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90p@chr12:208274..208283, +
2.83e-66FFCP PHASE2:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90p@chr22:41734286..41734290, +
2.83e-66FFCP PHASE1:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90p@chr1:153476496..153476503, +
2.83e-66FFCP PHASE1:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90p9@INPP5K
2.83e-66FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90p@chr21:45724075..45724081, +
2.83e-66FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90p@chr13:51913893..51913901, +
2.83e-66FFCP PHASE2:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90p@chr13:99135420..99135443, -
2.83e-66FFCP PHASE2:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90p@chr12:208292..208304, +
2.83e-66FFCP PHASE2:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90p@chr1:153476496..153476503, +
4.34e-66FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49p@chr3:69928426..69928436, +
4.34e-66FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49p@chr3:69928426..69928436, +
5.13e-66FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390p@chr1:43533230..43533270, +
5.13e-66FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390+, p@chr1:43533230..43533270
1.01e-59FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797p@chr9:140088882..140088898, -
1.01e-59FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797p@chr9:140088882..140088898, -
1.82e-59FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599fp5@MFRP, p6@C1QTNF5
1.82e-59FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599fp5@MFRP, p6@C1QTNF5
1.82e-59FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599fp@chr16:84228961..84228982, +
1.82e-59FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599fp@chr16:84228961..84228982, +
6.44e-59FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36dfp5@CLIC6
6.44e-59FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36dfp5@CLIC6
1.58e-53FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573p@chr13:99135278..99135298, -
1.58e-53FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573p@chr13:99135278..99135298, -
9.03e-53FFCP PHASE2:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54fp4@TMCC2
9.03e-53FFCP PHASE1:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54fp4@TMCC2
3.84e-50FFCP PHASE1:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cdp@chr17:932596..932605, -
3.84e-50FFCP PHASE2:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cdp@chr17:932596..932605, -
5.37e-50FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028p1@SLC16A8
5.37e-50FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028p1@SLC16A8
8.88e-50FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8p@chr2:235591306..235591328, +
8.88e-50FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8p@chr2:235591306..235591328, +
1.05e-49FFCP PHASE1:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086bp1@DIAPH2-AS1
1.05e-49FFCP PHASE2:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086bp1@DIAPH2-AS1
1.05e-49FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086bp@chr3:183733654..183733680, -
1.05e-49FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086bp@chr3:183733654..183733680, -
1.24e-49FFCP PHASE1:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606cp@chr16:89441550..89441568, -
1.24e-49FFCP PHASE2:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606cp@chr16:89441550..89441568, -
1.73e-49FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328p@chr3:98672197..98672201, +
1.73e-49FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328p@chr3:98672197..98672201, +
5.28e-49FFCP PHASE2:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3fp4@OTX2
5.28e-49FFCP PHASE1:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3fp4@OTX2
9.58e-49FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2p@chr14:87636652..87636657, -
9.58e-49FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2p@chr14:87636652..87636657, -
1.38e-48FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2p@chr3:69928371..69928385, +
1.38e-48FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2p@chr3:69928371..69928385, +
2.88e-48FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61cp13@NAV3
2.88e-48FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61cp13@NAV3
3.25e-48FFCP PHASE2:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621p1@SLC1A7
3.25e-48FFCP PHASE1:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621p1@SLC1A7
6.65e-45FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004p3@CLIC6
6.65e-45FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004p3@CLIC6
9.76e-45FFCP PHASE1:Hg19::chr7:129028525..129028531,+#_b9c6a089e1fe6b5c7a48fb230064ad86p32@AHCYL2
9.76e-45FFCP PHASE2:Hg19::chr9:111764519..111764525,-#_b9c6a089e1fe6b5c7a48fb230064ad86p@chr9:111764519..111764525, -
9.76e-45FFCP PHASE2:Hg19::chr5:82640256..82640260,+#_b9c6a089e1fe6b5c7a48fb230064ad86p@chr5:82640256..82640260, +
9.76e-45FFCP PHASE2:Hg19::chr7:129028525..129028531,+#_b9c6a089e1fe6b5c7a48fb230064ad86p32@AHCYL2
9.76e-45FFCP PHASE1:Hg19::chr9:111764519..111764525,-#_b9c6a089e1fe6b5c7a48fb230064ad86p@chr9:111764519..111764525, -
9.76e-45FFCP PHASE1:Hg19::chr2:219610770..219610777,+#_b9c6a089e1fe6b5c7a48fb230064ad86p19@TTLL4










Property "Property value" (as page type) with input value "UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.