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UBERON:0000974

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Name:neck
Namespace:FANTOM
Definition:"Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
Xrefs:
links:

AEO:0000108
BTO:0000420
EFO:0000967
EHDAA2:0003108
FMA:7155
GAID:86
galen:Neck
[1]
MA:0000024
MAT:0000297
MESH:A.01.598
MIAA:0000297
ncithesaurus:Neck
OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA

SCTID:302550007
Synonyms: "collum" RELATED LATIN [Wikipedia:Neck]
Comments:Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck.
Alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000475(organism subdivision)
part_of:UBERON:0000153(anterior region of body),UBERON:0007811(craniocervical region)



Children

part of:UBERON:0000341 (throat),UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000974 (neck), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.76e-68FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_7238eb45a4984197e5c2b81e8c197f9cp4@uc009bpa.1
1.76e-68FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_7238eb45a4984197e5c2b81e8c197f9cp4@uc009bpa.1
2.4e-67FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_f5054c81f8d04712ac7c5f94fc3e47b2p8@uc009bpa.1
2.4e-67FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_f5054c81f8d04712ac7c5f94fc3e47b2p8@uc009bpa.1
1.12e-65FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_1adc360b7ad93bf3c3496d6ee8f219dep1@ENSMUST00000103288, p1@uc009bpl.1
1.12e-65FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_1adc360b7ad93bf3c3496d6ee8f219dep1@ENSMUST00000103288, p1@uc009bpl.1
2.12e-64FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_c56aeafc26793df679d156c1445a5dd7p@chr6:41491752..41491776, -
2.12e-64FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_c56aeafc26793df679d156c1445a5dd7p@chr6:41491752..41491776, -
2.12e-64FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_c56aeafc26793df679d156c1445a5dd7p@chr12:108361918..108361930, -
2.12e-64FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_c56aeafc26793df679d156c1445a5dd7p@chr12:108361918..108361930, -
3.88e-63FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_1f627209c614cb2a02e0c0ac25ef85a8p2@ENSMUST00000103283
3.88e-63FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_1f627209c614cb2a02e0c0ac25ef85a8p2@ENSMUST00000103283
4.88e-63FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_05a68fa82b4db7d5647d9e2d88c03ecbp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
4.88e-63FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_05a68fa82b4db7d5647d9e2d88c03ecbp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
7.68e-62FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f3abbddf90006ee540156bb3dc94174dp@chr9:44807434..44807445, -
7.68e-62FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f3abbddf90006ee540156bb3dc94174dp@chr9:44807434..44807445, -
1.0e-61FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_0b876d5ae978a1d5f18d8553efdf15bap@chr6:41494001..41494028, +
1.0e-61FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_0b876d5ae978a1d5f18d8553efdf15bap@chr6:41494001..41494028, +
2.4e-61FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_a2b89f7c8640e1a1c5cc90f6d983604ap@chr9:44809185..44809215, -
2.4e-61FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_a2b89f7c8640e1a1c5cc90f6d983604ap@chr9:44809185..44809215, -
2.59e-61FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_c52165c61634b4b96e87538b839bfb86p11@Prkcq
2.59e-61FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_c52165c61634b4b96e87538b839bfb86p11@Prkcq
8.25e-61FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_924a5a1b7d4e85bcb6abc9c0fbc3c6cfp@chr14:54791784..54791787, +
8.25e-61FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_924a5a1b7d4e85bcb6abc9c0fbc3c6cfp@chr14:54791784..54791787, +
1.47e-60FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_9f911d1bc9ef4dccb14e20056986447bp1@ENSMUST00000103263
1.47e-60FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_9f911d1bc9ef4dccb14e20056986447bp1@ENSMUST00000103263
2.74e-60FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_40ce1127a0a73a8fc08113e2babdb14ep5@Themis
2.74e-60FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_40ce1127a0a73a8fc08113e2babdb14ep5@Themis
3.21e-60FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_92aaa98abb832daee01d51522eb60167p5@uc009bpa.1
3.21e-60FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_92aaa98abb832daee01d51522eb60167p5@uc009bpa.1
3.77e-60FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_927dc2438c3609340919ed20635d2b04p@chr9:44793518..44793537, +
3.77e-60FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_927dc2438c3609340919ed20635d2b04p@chr9:44793518..44793537, +
4.87e-60FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_775275c7f1a630ec1aeca1a0da67416ap@chr6:41071548..41071565, +
4.87e-60FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_775275c7f1a630ec1aeca1a0da67416a+, p@chr6:41071548..41071565
9.63e-60FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_f8f2dea3881125138cb390b5360ad860p2@uc009bnp.1, p2@uc012eki.1
9.63e-60FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_f8f2dea3881125138cb390b5360ad860p2@uc009bnp.1, p2@uc012eki.1
1.1e-59FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_3e584efc4a25f3b40e4080026a68818ep3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.1e-59FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_3e584efc4a25f3b40e4080026a68818ep3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
5.49e-59FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_50403456043528cfc3567e3582c26b8ep5@Tcf7
5.49e-59FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_50403456043528cfc3567e3582c26b8ep5@Tcf7
2.14e-58FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_722cf486060e799e177d33670b1a1231p@chr14:61328148..61328173, +
2.14e-58FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_722cf486060e799e177d33670b1a1231p@chr14:61328148..61328173, +
3.25e-58FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_736b39e00629859bb2e9a8e5380ade8ap2@uc009bpa.1
3.25e-58FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_736b39e00629859bb2e9a8e5380ade8ap2@uc009bpa.1
3.74e-58FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_c3726a4c1be0a01e5c9daac91a03fdaap2@Sh2d1a
3.74e-58FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_c3726a4c1be0a01e5c9daac91a03fdaap2@Sh2d1a
7.15e-58FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_d43cd2cad3629b3ee33466345a8c58bcp1@uc012ekr.1
7.15e-58FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_d43cd2cad3629b3ee33466345a8c58bcp1@uc012ekr.1
9.05e-58FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_3628521cae3e212e299eab3dce51041fp2@1810009J06Rik
9.05e-58FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_3628521cae3e212e299eab3dce51041fp2@1810009J06Rik
1.34e-57FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_90140e8f14b92d125ab4cb6bc0faa063p1@uc012ekk.1
1.34e-57FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_90140e8f14b92d125ab4cb6bc0faa063p1@uc012ekk.1
1.56e-57FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_bd1a94fb0be835a284e60307e23a1be8p1@ENSMUST00000103265
1.56e-57FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_bd1a94fb0be835a284e60307e23a1be8p3@uc009bpo.1, p3@uc009bpp.1
1.56e-57FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_bd1a94fb0be835a284e60307e23a1be8p1@ENSMUST00000103265
1.56e-57FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_bd1a94fb0be835a284e60307e23a1be8p3@uc009bpo.1, p3@uc009bpp.1
3.61e-57FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_0e187d90351c2e8df9a74783b35d7e7ep@chr7:133512043..133512060, -
3.61e-57FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_0e187d90351c2e8df9a74783b35d7e7ep@chr7:133512043..133512060, -
4.31e-57FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_7e1aabdd7ea44ba1f086118d9b43df03p2@Gm5409
4.31e-57FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_7e1aabdd7ea44ba1f086118d9b43df03p2@Gm5409
6.91e-57FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_bf75b2a4519504d179ba22e32d52e5c9p4@Trat1
6.91e-57FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_bf75b2a4519504d179ba22e32d52e5c9p4@Trat1
6.93e-57FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_0e97750df4be94d7ff6c4252af1a1118p5@Trat1
6.93e-57FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_0e97750df4be94d7ff6c4252af1a1118p5@Trat1
7.43e-57FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_93b86e1d02b063fe89f3fcfc0c82f6c4p@chr6:41489240..41489252, +
7.43e-57FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_93b86e1d02b063fe89f3fcfc0c82f6c4p@chr6:41489240..41489252, +
1.27e-56FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_c94cc0cdec3bf6cabcce5ed455216c27p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.27e-56FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_c94cc0cdec3bf6cabcce5ed455216c27p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.56e-56FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_8725327fbdf00ccf3c167691ce07e97ap1@ENSMUST00000103282
1.56e-56FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_8725327fbdf00ccf3c167691ce07e97ap@chr6:41494376..41494389, -
1.56e-56FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_8725327fbdf00ccf3c167691ce07e97ap1@ENSMUST00000103282
1.56e-56FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_8725327fbdf00ccf3c167691ce07e97ap@chr6:41494376..41494389, -
1.67e-56FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_194f96f9c6b2d5eaf9ef8011189e17f8p1@ENSMUST00000103298, p1@uc009bpy.1
1.67e-56FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_194f96f9c6b2d5eaf9ef8011189e17f8p1@ENSMUST00000103298, p1@uc009bpy.1
1.92e-56FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_ef4640ad4a889834a7fd5b9cf8e6a162p@chr6:41492643..41492662, +
1.92e-56FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_ef4640ad4a889834a7fd5b9cf8e6a162p@chr6:41492643..41492662, +
2.05e-56FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_14f66a731043c7c722fd884cb49e26f9p@chr14:54794540..54794554, +
2.05e-56FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_14f66a731043c7c722fd884cb49e26f9p@chr14:54794540..54794554, +
2.23e-56FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_e9d7271ccaf52270f2a0573c91afccb3p@chr14:54496363..54496388, +
2.23e-56FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_e9d7271ccaf52270f2a0573c91afccb3p@chr14:54496363..54496388, +
2.23e-56FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_e9d7271ccaf52270f2a0573c91afccb3p@chr6:41491801..41491815, -
2.23e-56FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_e9d7271ccaf52270f2a0573c91afccb3p@chr6:41491801..41491815, -
2.36e-56FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_1c50d6c5dfb7dd8a19f13a6f2fa084a3p@chr6:41492605..41492621, +
2.36e-56FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_1c50d6c5dfb7dd8a19f13a6f2fa084a3p@chr6:41492605..41492621, +
2.54e-56FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_ef30aec9544f3c4b4c7e22e01df8405fp1@Il13
2.54e-56FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_ef30aec9544f3c4b4c7e22e01df8405fp1@Il13
2.88e-56FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_c844cb35ca488249c6509c3d076c1ed3p7@Lat
2.88e-56FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_c844cb35ca488249c6509c3d076c1ed3p7@Lat
3.14e-56FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_917fcd3ca94dd9991976521349bdf800p@chr6:41138311..41138333, +
3.14e-56FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_917fcd3ca94dd9991976521349bdf800p@chr6:41138311..41138333, +
4.06e-56FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_cfcc5a838fc25a9184568e70c3fb3c00p5@uc009bnp.1, p5@uc012eki.1
4.06e-56FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_cfcc5a838fc25a9184568e70c3fb3c00p5@uc009bnp.1, p5@uc012eki.1
4.76e-56FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_88ed89f34d1858e870eb7bf9d2574d27p6@uc009bpa.1
4.76e-56FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_88ed89f34d1858e870eb7bf9d2574d27p6@uc009bpa.1
4.76e-56FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_88ed89f34d1858e870eb7bf9d2574d27p8@Lat
4.76e-56FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_88ed89f34d1858e870eb7bf9d2574d27p@chr4:125978325..125978339, -
4.76e-56FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_88ed89f34d1858e870eb7bf9d2574d27p8@Lat
4.76e-56FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_88ed89f34d1858e870eb7bf9d2574d27p@chr4:125978325..125978339, -
3.9e-55FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_cc89b7017d2f0107b67a1d34207998afp2@Cd6
3.9e-55FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_cc89b7017d2f0107b67a1d34207998afp2@Cd6