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UBERON:0000475

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Name:organism subdivision
Namespace:FANTOM
Definition:"Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part]
Xrefs:
links:

AAO:0010053
AEO:0000032
BILA:0000032
CARO:0000032
EFO:0000808
EHDAA2:0003032
FBbt:00007009
FMA:7153
galen:BodyPart
HAO:0000032
MA:0002433
MAT:0000293
MESH:A.01
MIAA:0000293
ncithesaurus:Body_Part
OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA
TAO:0001308
TGMA:0001840
XAO:0003013

ZFA:0001308
Synonyms: "body part" RELATED []
"body region" RELATED [FMA:7153]
"cardinal body part" RELATED [FMA:7153]
Comments:Editor note: revise after CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency
Alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308
Subset: uberon_slim
upper_level

Ontology association

Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.



link to ontology dataset


data

Parents

is_a:UBERON:0010000(multicellular anatomical structure)
part_of:UBERON:0000468(multi-cellular organism)



Children

is a:UBERON:0000026 (appendage),UBERON:0000153 (anterior region of body),UBERON:0000154 (posterior region of body),UBERON:0000310 (breast),UBERON:0000341 (throat),UBERON:0000974 (neck),UBERON:0001137 (dorsum),UBERON:0001444 (subdivision of head),UBERON:0001467 (shoulder),UBERON:0002355 (pelvis),UBERON:0005881 (limb outgrowth),UBERON:0007029 (surface),UBERON:0007811 (craniocervical region),UBERON:0009113 (thymic region),UBERON:0009569 (subdivision of trunk),UBERON:0010707 (appendage girdle complex),UBERON:0010758 (subdivision of organism along appendicular axis),UBERON:0011676 (subdivision of organism along main body axis),UBERON:0013701 (main body axis),UBERON:0013702 (body proper),UBERON:5002544 (digit plus metapodial segment)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens) Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000475 (organism subdivision), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

No analysis results