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UBERON:0001474

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Name:bone element
Namespace:FANTOM
Definition:"Skeletal element that is composed of bone tissue[VSAO]." [VSAO:0000057, Wikipedia:Bone]
Xrefs:
links:

AAO:0000047
AEO:0000082
BTO:0000140
EFO:0000298
EHDAA2:0003082
ENVO:00002039
EV:0100140
FMA:30317
FMA:5018
GAID:92
galen:Bone
MA:0001459
MAT:0000299
MIAA:0000299
ncithesaurus:Bone
OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA
SCTID:272673000
TAO:0001514
VHOG:0001190
VSAO:0000057
XAO:0000169

ZFA:0001514
Synonyms: "bone element" EXACT [VSAO:0000057]
"bone organ" EXACT []
Comments:Alternate definition: Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]
Alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004765(skeletal element)
disjoint_from:UBERON:0001630(muscle organ),UBERON:0005090(muscle structure),UBERON:0010538(paired limb/fin segment)
part_of:UBERON:0001434(skeletal system)



Children

is a:UBERON:0002495 (long bone),UBERON:0002513 (endochondral bone),UBERON:0002514 (intramembranous bone),UBERON:0007842 (membrane bone),UBERON:0007914 (head or neck bone),UBERON:0008001 (irregular bone),UBERON:0008202 (bone of hip region),UBERON:0010740 (bone of appendage girdle complex),FF:0100372 (bone cancer cell)
disjoint from:UBERON:0000982 (skeletal joint),UBERON:0001434 (skeletal system)
part of:CL:0000092 (osteoclast),CL:0001035 (bone cell),UBERON:0002371 (bone marrow),UBERON:0002481 (bone tissue),UBERON:0005913 (zone of bone organ)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001474 (bone element), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.59e-110FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_98b13c3fdcd2604ce2180d24cf7987e2p@chr1:161187824..161187847, +
9.59e-110FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_98b13c3fdcd2604ce2180d24cf7987e2p@chr1:161187824..161187847, +
1.51e-105FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_440a2da583ea459e18a48c468d8c2c73p@chr16:50313426..50313459, +
1.51e-105FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_440a2da583ea459e18a48c468d8c2c73p@chr16:50313426..50313459, +
1.73e-105FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_a5b1daabd945ec51816cbfbfe51dec48p@chr1:161188661..161188679, +
1.73e-105FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_a5b1daabd945ec51816cbfbfe51dec48p@chr1:161188661..161188679, +
6.7e-104FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_adb87788aa53f513bd48bbfcfa9aa60ap7@EMILIN2
6.7e-104FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_adb87788aa53f513bd48bbfcfa9aa60ap7@EMILIN2
8.62e-104FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_2b88a603ac0040e237a99edbd6826121p@chr7:77050554..77050601, +
8.62e-104FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_2b88a603ac0040e237a99edbd6826121p@chr7:77050554..77050601, +
1.56e-102FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_bbf63064b7103b0a8a3a506f4307cb4bp@chr1:161188746..161188758, +
1.56e-102FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_bbf63064b7103b0a8a3a506f4307cb4bp@chr1:161188746..161188758, +
4.16e-102FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_eafb1bb2214c9b5079ca7dfd8122e873p@chr17:7482481..7482508, -
4.16e-102FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_eafb1bb2214c9b5079ca7dfd8122e873p@chr17:7482481..7482508, -
1.82e-101FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_99b731390ab71daa6aed38d768265674p5@IFI30
1.82e-101FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_99b731390ab71daa6aed38d768265674p5@IFI30
4.93e-100FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_b5a80d0306b792ca6c10e7ab77d5f872p@chr4:3387239..3387324, -
4.93e-100FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_b5a80d0306b792ca6c10e7ab77d5f872p@chr4:3387239..3387324, -
5.08e-99FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_efebe6034fed9f05b7a3b2b1f2096618+, p@chr7:2832730..2832791
5.08e-99FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_efebe6034fed9f05b7a3b2b1f2096618p@chr7:2832730..2832791, +
2.26e-98FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_2d6bc01cb5d299ab07ccab66fef75babp15@MGAT1
2.26e-98FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_2d6bc01cb5d299ab07ccab66fef75babp15@MGAT1
8.47e-98FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_b220f11e883621b6370f84b863253af8p7@IFI30
8.47e-98FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_b220f11e883621b6370f84b863253af8p7@IFI30
1.3e-97FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_adee40317dfa52cb0deb095bba635639p8@CHI3L2
1.3e-97FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_adee40317dfa52cb0deb095bba635639p8@CHI3L2
2.53e-97FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_d788059806c67df8af9847a7945ddb47p1@AK126179
2.53e-97FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_d788059806c67df8af9847a7945ddb47p1@AK126179
1.58e-96FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_cdbdf210f1d8853585267caa80a39642p@chr2:145429606..145429658, +
1.58e-96FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_cdbdf210f1d8853585267caa80a39642p@chr2:145429606..145429658, +
5.46e-96FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_cb5e15ff3ac4f709b8b85576cfa63b6dp@chr19:18286116..18286156, +
5.46e-96FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_cb5e15ff3ac4f709b8b85576cfa63b6dp@chr19:18286116..18286156, +
8.18e-96FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_b8eaa3a3d6530cf1a0835d3605e037d6p2@CD300C
8.18e-96FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_b8eaa3a3d6530cf1a0835d3605e037d6p2@CD300C
4.86e-95FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_1fb6dae9c966d1e97cb4ebf0211fd1bfp1@CYP1B1-AS1
4.86e-95FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_1fb6dae9c966d1e97cb4ebf0211fd1bfp1@CYP1B1-AS1
7.97e-95FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_74be294bc5ff26b464e1f9eb9a82e4d7p@chr15:65174546..65174583, -
7.97e-95FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_74be294bc5ff26b464e1f9eb9a82e4d7p@chr15:65174546..65174583, -
1.31e-94FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_2d891e7b740d2497a2cda3a8fdc89f0cp7@FNIP2
1.31e-94FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_2d891e7b740d2497a2cda3a8fdc89f0cp7@FNIP2
3.51e-94FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_68b0f243f102bf3268e3f9aa322dcbdep@chr4:185314125..185314143, -
3.51e-94FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_68b0f243f102bf3268e3f9aa322dcbdep@chr4:185314125..185314143, -
5.01e-94FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_db82f94b9185a5dff3e174519b1811c2p7@RNF13
5.01e-94FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_db82f94b9185a5dff3e174519b1811c2p7@RNF13
1.06e-93FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_6645c96deb4574ab2e38356e5ede0416p@chr19:52299474..52299504, -
1.06e-93FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_6645c96deb4574ab2e38356e5ede0416p@chr19:52299474..52299504, -
1.95e-93FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_546a0e681fecf3975ff93a3295c6610fp1@ENST00000425320
1.95e-93FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_546a0e681fecf3975ff93a3295c6610fp1@ENST00000425320
2.7e-93FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_c0f522368c0d460187d3613731a0f765+, p@chr1:161188686..161188721
2.7e-93FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_c0f522368c0d460187d3613731a0f765p@chr1:161188686..161188721, +
4.24e-93FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_cf60058934a60f1e4b32164629410344p@chr2:119726719..119726744, +
4.24e-93FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_cf60058934a60f1e4b32164629410344p@chr2:119726719..119726744, +
6.07e-93FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_3f8a7ddd188dd7e4fe1d5a2750f500d3p@chr19:18288064..18288080, +
6.07e-93FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_3f8a7ddd188dd7e4fe1d5a2750f500d3p@chr19:18288064..18288080, +
7.29e-93FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_acf7c15fecc1d2f086706db9de6e1008p@chr10:73648356..73648408, -
7.29e-93FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_acf7c15fecc1d2f086706db9de6e1008p@chr10:73648356..73648408, -
9.56e-93FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_64d10b3fc0782b7ca51979b5a4235205p@chr4:185314151..185314178, -
9.56e-93FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_64d10b3fc0782b7ca51979b5a4235205p@chr4:185314151..185314178, -
3.92e-92FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_2428d4c27d93dc0b8ef1b4a6765028d6p@chr4:185314188..185314207, -
3.92e-92FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_2428d4c27d93dc0b8ef1b4a6765028d6p@chr4:185314188..185314207, -
5.8e-92FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_1b10f9a03db1e610e85b412f9352bc03p@chrX:153286067..153286101, -
5.8e-92FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_1b10f9a03db1e610e85b412f9352bc03p@chrX:153286067..153286101, -
7.64e-92FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_e52e646674a42a0bb826a4380245a86cp@chrX:37664331..37664352, +
7.64e-92FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_e52e646674a42a0bb826a4380245a86cp@chrX:37664331..37664352, +
1.15e-91FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_8d2c446c94b1649612da35ba8db4f6e2p2@ZEB2-AS1
1.15e-91FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_8d2c446c94b1649612da35ba8db4f6e2p2@ZEB2-AS1
1.59e-91FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_8366d5dab8d081eb846ce39218c2ba3dp8@CTSS
1.59e-91FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_8366d5dab8d081eb846ce39218c2ba3dp8@CTSS
1.8e-91FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_837b623725d7f8bf720511c9bc8ac986p@chr8:116588888..116588904, +
1.8e-91FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_837b623725d7f8bf720511c9bc8ac986p@chr8:116588888..116588904, +
2.14e-91FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_24b3c4b2982cdefb6e768cd7ce457e03p4@RNF115
2.14e-91FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_24b3c4b2982cdefb6e768cd7ce457e03p4@RNF115
2.25e-91FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_a4fdb2d2100e01f1de8a378cfb6f9aaap@chr1:161188826..161188842, +
2.25e-91FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_a4fdb2d2100e01f1de8a378cfb6f9aaap@chr1:161188826..161188842, +
4.14e-91FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_cec7347d09181d7e9a4505077b2f6063p@chr2:129283966..129283970, +
4.14e-91FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_cec7347d09181d7e9a4505077b2f6063p@chr2:129283966..129283970, +
8.75e-91FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_0b66c350d5000de22333a848616fe8dfp@chr1:26602990..26603008, +
8.75e-91FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_0b66c350d5000de22333a848616fe8dfp@chr1:26602990..26603008, +
9.66e-91FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_7a9a09c14ac499ad9975df6b68d11e7dp@chr19:18285955..18285972, +
9.66e-91FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_7a9a09c14ac499ad9975df6b68d11e7dp@chr19:18285955..18285972, +
1.01e-90FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_7a6ba9b19216a6c46573d62a3d5c2234p@chr1:108593061..108593077, +
1.01e-90FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_7a6ba9b19216a6c46573d62a3d5c2234p@chr1:108593061..108593077, +
1.02e-90FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_3a44c163ac24435a1bc05286c505ec7bp5@CU676849, p5@CU689079
1.02e-90FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_3a44c163ac24435a1bc05286c505ec7bp5@CU676849, p5@CU689079
2.54e-90FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_232d143d11780afb88faedebc31997e1p@chr20:1517991..1518011, -
2.54e-90FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_232d143d11780afb88faedebc31997e1p@chr20:1517991..1518011, -
7.24e-90FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_8b9def73dd9026cf1e77bf2c374808aep@chr19:18283959..18283993, +
7.24e-90FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_8b9def73dd9026cf1e77bf2c374808aep@chr19:18283959..18283993, +
1.14e-89FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_4162ca8f8b172ee8d736a56a155f03e4p6@IFI30
1.14e-89FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_4162ca8f8b172ee8d736a56a155f03e4p6@IFI30
1.43e-89FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_71ddaeb8c7744ebcd59dd7801bc98f91p12@MGAT1
1.43e-89FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_71ddaeb8c7744ebcd59dd7801bc98f91p12@MGAT1
2.02e-89FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_8b5510fddb57233e55508a2f9e767a19p4@ST18
2.02e-89FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_8b5510fddb57233e55508a2f9e767a19p4@ST18
2.61e-89FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_7e236bbda5fc2773593686cee98c90dfp4@EIF2AK1
2.61e-89FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_7e236bbda5fc2773593686cee98c90dfp4@EIF2AK1
3.56e-89FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_c6f7cae828d5b812d5329355f8b4705fp@chr17:7483714..7483726, +
3.56e-89FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_c6f7cae828d5b812d5329355f8b4705fp@chr17:7483714..7483726, +
7.55e-89FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_d2ddeb97f817110b07d97a5329178559p@chr19:51625924..51625942, +
7.55e-89FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_d2ddeb97f817110b07d97a5329178559p@chr19:51625924..51625942, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Also called osseous tissue, (Latin: os). Is a type of hard endoskeletal connective tissue found in many vertebrate animals. Bone is the main tissue of body organs that support body structures, protect internal organs, (in conjunction with muscles) facilitate movement; and are involved with cell formation, calcium metabolism, and mineral storage.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal element that is composed of bone tissue.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.