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UBERON:0004765

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Name:skeletal element
Namespace:FANTOM
Definition:"Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
Xrefs:
links:

AAO:0011129
galen:SkeletalStructure
TAO:0001890
VSAO:0000128
XAO:0004012

ZFA:0005494
Comments:TODO - add more general class for other kinds of mineralized tissue
Subset: organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000062(organ)
part_of:UBERON:0001434(skeletal system)



Children

is a:UBERON:0001474 (bone element),UBERON:0004339 (calvarium),UBERON:0004637 (otic capsule),UBERON:0004756 (dermal skeletal element),UBERON:0007844 (cartilage element),UBERON:0010363 (endochondral element),UBERON:0010913 (vertebral element)
part of:UBERON:0004755 (skeletal tissue)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004765 (skeletal element), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.04e-99FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_beb79e0f1c60038cad5d8195170b1b06p@chr1:161187824..161187847, +
5.04e-99FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_beb79e0f1c60038cad5d8195170b1b06p@chr1:161187824..161187847, +
3.8e-95FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_27b63315c2caffa3275fa835b3e1357bp@chr1:161188661..161188679, +
3.8e-95FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_27b63315c2caffa3275fa835b3e1357bp@chr1:161188661..161188679, +
4.88e-95FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_edcd7c9370a22e6e71b6011324b0824ap@chr16:50313426..50313459, +
4.88e-95FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_edcd7c9370a22e6e71b6011324b0824ap@chr16:50313426..50313459, +
1.03e-93FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_fa507844f8793d967e1dd6b31e1e2f63p@chr7:77050554..77050601, +
1.03e-93FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_fa507844f8793d967e1dd6b31e1e2f63p@chr7:77050554..77050601, +
1.6e-93FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_e3a65b26dece1de662aca83d8613db76p7@EMILIN2
1.6e-93FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_e3a65b26dece1de662aca83d8613db76p7@EMILIN2
1.79e-92FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_835cd6b24fe4262373d1aa62eaf68cf1p@chr1:161188746..161188758, +
1.79e-92FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_835cd6b24fe4262373d1aa62eaf68cf1p@chr1:161188746..161188758, +
2.94e-92FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_1a21370a7dbaaee1f759c4eda8c7014fp@chr17:7482481..7482508, -
2.94e-92FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_1a21370a7dbaaee1f759c4eda8c7014fp@chr17:7482481..7482508, -
1.74e-91FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_c3a292b04884a3b64dfa3e61352bbf02p5@IFI30
1.74e-91FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_c3a292b04884a3b64dfa3e61352bbf02p5@IFI30
6.66e-90FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_773609cc7bceb8b59550f9903353bd6bp@chr4:3387239..3387324, -
6.66e-90FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_773609cc7bceb8b59550f9903353bd6bp@chr4:3387239..3387324, -
2.82e-89FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_c59b5041276d8f02266ed1324a9c37c9p@chr7:2832730..2832791, +
2.82e-89FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_c59b5041276d8f02266ed1324a9c37c9+, p@chr7:2832730..2832791
8.14e-89FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_c5d383366b31dcfd79f343ae18def0dep15@MGAT1
8.14e-89FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_c5d383366b31dcfd79f343ae18def0dep15@MGAT1
4.13e-88FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_8a51e0e9689287054ba2feb7f2a50f00p7@IFI30
4.13e-88FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_8a51e0e9689287054ba2feb7f2a50f00p7@IFI30
4.97e-88FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_55a590681a9ad23d909f3d221be941d4p8@CHI3L2
4.97e-88FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_55a590681a9ad23d909f3d221be941d4p8@CHI3L2
8.34e-88FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_070b254ba698d47b52283005755bed52p1@AK126179
8.34e-88FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_070b254ba698d47b52283005755bed52p1@AK126179
5.04e-87FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_deb81c091feb48c74f85b0346a4feff8p@chr2:145429606..145429658, +
5.04e-87FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_deb81c091feb48c74f85b0346a4feff8p@chr2:145429606..145429658, +
2.42e-86FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_ed3e7bf0314e43e365b646ec496cfa6bp@chr19:18286116..18286156, +
2.42e-86FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_ed3e7bf0314e43e365b646ec496cfa6bp@chr19:18286116..18286156, +
2.54e-86FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_c468c61fa80f56d5819cf7bf36424b3cp2@CD300C
2.54e-86FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_c468c61fa80f56d5819cf7bf36424b3cp2@CD300C
1.19e-85FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_7510245aeb0c8a02ead27bc12217e166p1@CYP1B1-AS1
1.19e-85FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_7510245aeb0c8a02ead27bc12217e166p1@CYP1B1-AS1
2.28e-85FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_b6b0340e3ee112dade2a7bc0c47a0a05p@chr15:65174546..65174583, -
2.28e-85FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_b6b0340e3ee112dade2a7bc0c47a0a05p@chr15:65174546..65174583, -
3.3e-85FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_a1134b6d92a492695032002c7df561b5p7@FNIP2
3.3e-85FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_a1134b6d92a492695032002c7df561b5p7@FNIP2
8.06e-85FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_e39090107d617e8157ac6525627f6b8bp7@RNF13
8.06e-85FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_e39090107d617e8157ac6525627f6b8bp7@RNF13
8.09e-85FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_0f2ff79faa259b419168fe360213955cp@chr4:185314125..185314143, -
8.09e-85FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_0f2ff79faa259b419168fe360213955cp@chr4:185314125..185314143, -
1.34e-84FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_6956f8a0e952cca83908aea49b11bb83p@chr19:52299474..52299504, -
1.34e-84FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_6956f8a0e952cca83908aea49b11bb83p@chr19:52299474..52299504, -
1.96e-84FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_71264e52e75990ae07fa5300fde1c97ep1@ENST00000425320
1.96e-84FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_71264e52e75990ae07fa5300fde1c97ep1@ENST00000425320
4.6e-84FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_6b383c67a1db297f985bd4b8d7f69979p@chr19:18288064..18288080, +
4.6e-84FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_6b383c67a1db297f985bd4b8d7f69979p@chr19:18288064..18288080, +
6.57e-84FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_fcb3099afadd366f74d77c5c8b7566e4+, p@chr1:161188686..161188721
6.57e-84FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_fcb3099afadd366f74d77c5c8b7566e4p@chr1:161188686..161188721, +
9.62e-84FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_6d2c8ae4c82457e586d5e99f8e0d9a8ap@chr10:73648356..73648408, -
9.62e-84FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_6d2c8ae4c82457e586d5e99f8e0d9a8ap@chr10:73648356..73648408, -
9.89e-84FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_38e1ac7c46caf1ac874922693a7f2c26p@chr2:119726719..119726744, +
9.89e-84FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_38e1ac7c46caf1ac874922693a7f2c26p@chr2:119726719..119726744, +
1.39e-83FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_39db7ffe7b11afad6e5f414869833320p@chr4:185314151..185314178, -
1.39e-83FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_39db7ffe7b11afad6e5f414869833320p@chr4:185314151..185314178, -
3.45e-83FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_f990b94e0dc07e0eece6a53d370ec15bp@chr4:185314188..185314207, -
3.45e-83FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_f990b94e0dc07e0eece6a53d370ec15bp@chr4:185314188..185314207, -
8.52e-83FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_21b5c394730fae55307b81404d217e5ap@chrX:37664331..37664352, +
8.52e-83FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_21b5c394730fae55307b81404d217e5ap@chrX:37664331..37664352, +
9.21e-83FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_cfa91bc91b5bb7ed0951104c95c85562p2@ZEB2-AS1
9.21e-83FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_cfa91bc91b5bb7ed0951104c95c85562p2@ZEB2-AS1
9.87e-83FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_bc47cc9c6061d2f99c762e999b7b0becp@chrX:153286067..153286101, -
9.87e-83FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_bc47cc9c6061d2f99c762e999b7b0becp@chrX:153286067..153286101, -
1.39e-82FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_4514bb2db51003c99c6268aa46b76cf1p@chr8:116588888..116588904, +
1.39e-82FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_4514bb2db51003c99c6268aa46b76cf1p@chr8:116588888..116588904, +
1.48e-82FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_2edfbb9c9710130bd7f53166656a4313p4@RNF115
1.48e-82FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_2edfbb9c9710130bd7f53166656a4313p4@RNF115
2.2e-82FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_32215ef285671a93b8fb85c8a269aa04p8@CTSS
2.2e-82FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_32215ef285671a93b8fb85c8a269aa04p8@CTSS
2.48e-82FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_a2794dbfa6b8d8412ec6df646929f736p@chr2:129283966..129283970, +
2.48e-82FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_a2794dbfa6b8d8412ec6df646929f736p@chr2:129283966..129283970, +
3.79e-82FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_5dec0ad7722bb39dfdb66b2f9d1516fap@chr1:161188826..161188842, +
3.79e-82FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_5dec0ad7722bb39dfdb66b2f9d1516fap@chr1:161188826..161188842, +
4.48e-82FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_f95f36f35aac45ca5edc89a933c34e6dp@chr1:26602990..26603008, +
4.48e-82FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_f95f36f35aac45ca5edc89a933c34e6dp@chr1:26602990..26603008, +
4.69e-82FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_ad4af3e1c3cc748c3f87ebe008d84398p5@CU676849, p5@CU689079
4.69e-82FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_ad4af3e1c3cc748c3f87ebe008d84398p5@CU676849, p5@CU689079
5.1e-82FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_4d7d0c6993872a3d7086d50ed92cb34ap@chr1:108593061..108593077, +
5.1e-82FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_4d7d0c6993872a3d7086d50ed92cb34ap@chr1:108593061..108593077, +
1.66e-81FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_5e1cbf216cbeb79f986e539c4dbe85fep@chr19:18285955..18285972, +
1.66e-81FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_5e1cbf216cbeb79f986e539c4dbe85fep@chr19:18285955..18285972, +
2.34e-81FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_bab3473bca6f08f11c9a3644c415500dp@chr20:1517991..1518011, -
2.34e-81FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_bab3473bca6f08f11c9a3644c415500dp@chr20:1517991..1518011, -
9.54e-81FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_1d5a826bc7f34437ccbc3717fd6bd7e8p6@IFI30
9.54e-81FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_1d5a826bc7f34437ccbc3717fd6bd7e8p6@IFI30
1.15e-80FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_94e01985e473eccc11af5440e5e0de9fp@chr19:18283959..18283993, +
1.15e-80FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_94e01985e473eccc11af5440e5e0de9fp@chr19:18283959..18283993, +
1.17e-80FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_ec94e59656863146e1fa24fbcc053e0bp12@MGAT1
1.17e-80FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_ec94e59656863146e1fa24fbcc053e0bp12@MGAT1
1.31e-80FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_c4e4f2c9aa8b575ee2af8c10bddd369cp4@ST18
1.31e-80FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_c4e4f2c9aa8b575ee2af8c10bddd369cp4@ST18
1.35e-80FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_615b907dcb59212650408d6f2d87ae6bp4@EIF2AK1
1.35e-80FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_615b907dcb59212650408d6f2d87ae6bp4@EIF2AK1
2.02e-80FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_66e1ec0cd741b1e73799d1d62b8bea6ap@chr17:7483714..7483726, +
2.02e-80FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_66e1ec0cd741b1e73799d1d62b8bea6ap@chr17:7483714..7483726, +
2.73e-80FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_bdd94e74ca15a57f37a062cd6c196f45p@chr19:51625924..51625942, +
2.73e-80FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_bdd94e74ca15a57f37a062cd6c196f45p@chr19:51625924..51625942, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.