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UBERON:0001558

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Name:lower respiratory tract
Namespace:FANTOM
Definition:"Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract]
Xrefs:
links:

EHDAA2:0001036
EMAPA:16738
FMA:45662
[1]
[2]
MA:0000435
OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g
SCTID:281488008

VHOG:0000382
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_45662-MA_0000435
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000072(segment of respiratory tract)



Children

part of:UBERON:0000170 (pair of lungs),CL:0002632 (epithelial cell of lower respiratory tract),UBERON:0004815 (lower respiratory tract epithelium),UBERON:0007196 (tracheobronchial tree)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001558 (lower respiratory tract), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_6e86b3582c80cc3e065071abc12a24f9p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_6e86b3582c80cc3e065071abc12a24f9p@chr12:17549752..17549763, +
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_6e86b3582c80cc3e065071abc12a24f9p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_6e86b3582c80cc3e065071abc12a24f9p3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_6e86b3582c80cc3e065071abc12a24f9p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_6e86b3582c80cc3e065071abc12a24f9p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_6e86b3582c80cc3e065071abc12a24f9-, p@chr3:89487103..89487111
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_6e86b3582c80cc3e065071abc12a24f9p3@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147338308..147338339, -
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_6e86b3582c80cc3e065071abc12a24f9p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_6e86b3582c80cc3e065071abc12a24f9p2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_6e86b3582c80cc3e065071abc12a24f9p@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_6e86b3582c80cc3e065071abc12a24f9p@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115644652..115644657, -
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_6e86b3582c80cc3e065071abc12a24f9p@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_6e86b3582c80cc3e065071abc12a24f9p2@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_6e86b3582c80cc3e065071abc12a24f9p@chr15:101258041..101258052, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_6e86b3582c80cc3e065071abc12a24f9p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_6e86b3582c80cc3e065071abc12a24f9p@chr16:32641594..32641601, +
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_6e86b3582c80cc3e065071abc12a24f9+, p@chr15:101258041..101258052
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_6e86b3582c80cc3e065071abc12a24f9p@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:108303887..108303893, +
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_6e86b3582c80cc3e065071abc12a24f9p@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_6e86b3582c80cc3e065071abc12a24f9p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_6e86b3582c80cc3e065071abc12a24f9p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_6e86b3582c80cc3e065071abc12a24f9p@chr5:135422125..135422141, -
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_6e86b3582c80cc3e065071abc12a24f9p@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_6e86b3582c80cc3e065071abc12a24f9p@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_6e86b3582c80cc3e065071abc12a24f9-, p@chr5:91199084..91199088
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_6e86b3582c80cc3e065071abc12a24f9p@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_6e86b3582c80cc3e065071abc12a24f9p@chr9:110941246..110941254, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_6e86b3582c80cc3e065071abc12a24f9-, p@chr2:164393992..164394012
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_6e86b3582c80cc3e065071abc12a24f9p@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_6e86b3582c80cc3e065071abc12a24f9p@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_6e86b3582c80cc3e065071abc12a24f9p@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_6e86b3582c80cc3e065071abc12a24f9p@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_6e86b3582c80cc3e065071abc12a24f9p@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_6e86b3582c80cc3e065071abc12a24f9p1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_6e86b3582c80cc3e065071abc12a24f9-, p@chr5:135422125..135422141
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_6e86b3582c80cc3e065071abc12a24f9p@chr11:4165247..4165267, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_d9f172989452624b429aa083732be3d0-, p@chr19:47932377..47932386
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_d9f172989452624b429aa083732be3d0p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_d9f172989452624b429aa083732be3d0p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_d9f172989452624b429aa083732be3d0p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_d9f172989452624b429aa083732be3d0p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_d9f172989452624b429aa083732be3d0p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_d9f172989452624b429aa083732be3d0p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_d9f172989452624b429aa083732be3d0p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_d9f172989452624b429aa083732be3d0p3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_d9f172989452624b429aa083732be3d0p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_d9f172989452624b429aa083732be3d0p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_d9f172989452624b429aa083732be3d0p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_d9f172989452624b429aa083732be3d0p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_d9f172989452624b429aa083732be3d0p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_d9f172989452624b429aa083732be3d0p3@Dtd1
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_d9f172989452624b429aa083732be3d0p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_d9f172989452624b429aa083732be3d0p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_d9f172989452624b429aa083732be3d0-, p@chr19:47939269..47939279
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_d9f172989452624b429aa083732be3d0p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_d9f172989452624b429aa083732be3d0p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_d9f172989452624b429aa083732be3d0+, p@chr6:147212620..147212625
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_d9f172989452624b429aa083732be3d0p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_d9f172989452624b429aa083732be3d0p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_d9f172989452624b429aa083732be3d0p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_d9f172989452624b429aa083732be3d0p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_d9f172989452624b429aa083732be3d0p@chr19:47939269..47939279, -
6.04e-65FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_ec733646a385f3c54af91dded59d1b00p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_ec733646a385f3c54af91dded59d1b00p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_ec733646a385f3c54af91dded59d1b00p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_ec733646a385f3c54af91dded59d1b00p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_ec733646a385f3c54af91dded59d1b00p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_ec733646a385f3c54af91dded59d1b00p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_ec733646a385f3c54af91dded59d1b00p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_ec733646a385f3c54af91dded59d1b00p@chr15:38385124..38385138, +
4.9e-53FFCP PHASE2:Mm9::chr11:96608968..96608974,-#_d3bcdfc3674312a3fcfa3374183fc9b4p2@ENSMUST00000166907
4.9e-53FFCP PHASE2:Mm9::chr6:147212455..147212462,-#_d3bcdfc3674312a3fcfa3374183fc9b4p6@Pthlh
4.9e-53FFCP PHASE1:Mm9::chr12:8799233..8799252,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chr12:8799233..8799252, +
4.9e-53FFCP PHASE2:Mm9::chr1:152012112..152012121,-#_d3bcdfc3674312a3fcfa3374183fc9b4p6@ENSMUST00000163840
4.9e-53FFCP PHASE1:Mm9::chrX:163645025..163645028,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chrX:163645025..163645028, +
4.9e-53FFCP PHASE1:Mm9::chr5:103804464..103804467,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chr5:103804464..103804467, +
4.9e-53FFCP PHASE1:Mm9::chr1:152012112..152012121,-#_d3bcdfc3674312a3fcfa3374183fc9b4p6@ENSMUST00000163840
4.9e-53FFCP PHASE1:Mm9::chr17:71105425..71105430,+#_d3bcdfc3674312a3fcfa3374183fc9b4p@chr17:71105425..71105430, +